# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.28 2010/05/19 19:58:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.29 2010/06/07 06:52:32 jlec Exp $
+
+*ccpn-2.1.3.1_p100607 (07 Jun 2010)
+
+ 07 Jun 2010; Justin Lecher <jlec@gentoo.org> -ccpn-2.1.3.ebuild,
+ -ccpn-2.1.3.1.ebuild, -ccpn-2.1.3.1_p100422.ebuild,
+ +ccpn-2.1.3.1_p100607.ebuild:
+ Python updates & cleanup of old versions
*ccpn-2.1.3.1_p100519 (19 May 2010)
AUX formatConverter 293 RMD160 a2229663a5d682e17af8a6cb5f927f66ce59bea6 SHA1 fcd45ab7019911756194457bef1889b4320f00f5 SHA256 e0a4c8303185813084b3f2077e8909cd72593f1d0043443d7ba5f21901f81d2a
AUX pipe2azara 297 RMD160 0cd01c0cf629710ff4b4267d9449b0b1f3d586e1 SHA1 16566033682903504d77f4acaa93a6625557087e SHA256 e34774b668732c3f4fb764e6c83cc938da3fb514cf5a58bb820827304dc80979
DIST analysis2.1.2_1.tar.gz 19227793 RMD160 f633a8338e3fbb9d8ad77c9482d63191419b0885 SHA1 f711a424da22c84295610483a6cc481d2d2161e9 SHA256 e7eda0b50c357a2b62633c473da4621ccdc48c747c59d8ccb495d57e846308fa
-DIST analysis2.1.3.tar.gz 18917835 RMD160 068fed988cb20d899266680f7dd7af2ca1ae2b46 SHA1 51d54036775cc271251c9deaf112903296db19e6 SHA256 6e614d0ab7d4ccaed9d5e0401f25a821c81def4bda28e1426f4112c521031e47
DIST analysis2.1.3_1.tar.gz 18932918 RMD160 5f19ea6fe47c2910d16fcba8d1a78f0e1dead731 SHA1 683bdfb17d14979eb6477aaa99e4c4af5003beb2 SHA256 bbc1ba5434f896d38b6745c1dc9adc470a78d3be7b879160edcd635a19228b74
DIST ccpn-update-100216.patch.bz2 37914 RMD160 92d2845f9a21a5ddc9fd71cf56928b61f497530c SHA1 de61701435675d10165826cf4cd590dca336cbb2 SHA256 13e062188e953ea62e779b7d89004ce103db61daf228cf6b9f7d3c77f39947fc
-DIST ccpn-update-100422.patch.bz2 128073 RMD160 7ea8a1eef17399274d319b5b8f1e4e2035a7cb4e SHA1 dcf74f667b5a34a93306da78d370396e0950c86e SHA256 5d0e0adfbf9efdf598ec7dd62059f08d7ace8f41799558c18105054599cf56df
DIST ccpn-update-100519.patch.bz2 136871 RMD160 34e91278eaa0f29eaca569033a3960440060b729 SHA1 32a6647b8e166748c539e990c0b2d1b21b995a23 SHA256 69f8d647ab0bb7d6d7fbc6f8a23b8164d97916dcef3b0b50137902084ad2b99e
+DIST ccpn-update-100607.patch.bz2 148229 RMD160 5154191926916e592ae3f3bede35937b93ec33be SHA1 0035824a5901276ba9b0d2efeee5e30d88264d32 SHA256 d9ed5dc5c56ea1f65a6e8d567d177a6ed5733d1281cb798e8e4c00f066f86821
EBUILD ccpn-2.1.2.1_p100216.ebuild 4880 RMD160 e892baef0d74df30f40e5b393c893159bd08dda5 SHA1 e1a7a09588aa2f4e341e5d94f5260072dab10474 SHA256 7777534b663f05898cf40cc1f7114b2a6de38343fe5ab31f14d4c4c4f2456c47
-EBUILD ccpn-2.1.3.1.ebuild 4977 RMD160 12969caf3118f10fd0bd794f58d31be3e5c60c03 SHA1 dcdd685d5321ed97ea821fa6799e35d9b287e9dd SHA256 b55eb637a743dd0ad6c1a31b623c1c814019dcfc45f734996d3dec34a0ab5033
-EBUILD ccpn-2.1.3.1_p100422.ebuild 5137 RMD160 39be1eb0efad80b6a18e2e8c4cf2d9599fbe52f7 SHA1 88fd579646901b2df8bdb9966aa98aa1cdedb3e7 SHA256 7fad431ef79ec60b520a29306cad9bd9807c05553c6bb8f1d4b589c7cce71b1c
EBUILD ccpn-2.1.3.1_p100519.ebuild 5137 RMD160 a1e3bf959be4d0b0738fd49145470f41119c1137 SHA1 3f9d0195056fe4608f086ec51bf8ce594d4c947c SHA256 cc3dc5bcc874f45b75016276f81b2e771197b3bf3eb187d6c95953fddf5847d5
-EBUILD ccpn-2.1.3.ebuild 4975 RMD160 99530170d2323e58cd105a5a8e47c493d0fd765c SHA1 5c298bffe292915768357e8273a1fb3d05312fb3 SHA256 1f9701c42f9e9754f0d8dcb258e3e365ec31f4e8d99b5649376083b7ff87bbb9
-MISC ChangeLog 4850 RMD160 a373bffc32ba34f52052d66b9f970d28984c80d8 SHA1 f3ac43181efa6dfaf53610afb1b4709bea757232 SHA256 0db02f80a4264d5f90e58a5dbc56d4c4e871a70d58c2d5544f0c24042e62b466
+EBUILD ccpn-2.1.3.1_p100607.ebuild 5137 RMD160 afa602fe700c230b52ddb64ac25a7a843efefa0b SHA1 fbefd8b8b7c2decc29992c55466e90cf3c93777e SHA256 81162c3e317b78d2d5206c8c03cb141c7641826864890b73d54c94c9654771a2
+MISC ChangeLog 5084 RMD160 f1936f13167fad4d90a53c39715de7125c2bb03f SHA1 c16a25207623e52281a2764fa251e4615cb4dde3 SHA256 cd133be631c3ebbd4bfaee861525e5b4c574e7be7928a76c72f4530e2a50e314
MISC metadata.xml 226 RMD160 0355d90bd8d1c106a19b136045ebdf970a0a2485 SHA1 1db0b2a470657641079d6613829df49a5c043ed6 SHA256 094a3ac740c81b9afbff3c855ba93cc20a593cad2392f6f4404715608a836fa1
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+++ /dev/null
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1.ebuild,v 1.2 2010/02/28 13:48:39 arfrever Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-#PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- opengl? ( virtual/glut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100422.ebuild,v 1.1 2010/04/23 06:03:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100607.ebuild,v 1.1 2010/06/07 06:52:32 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2:2.5"
+++ /dev/null
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.ebuild,v 1.2 2010/02/28 13:48:39 arfrever Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-#PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- opengl? ( virtual/glut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
projects / gentoo.git / commitdiff