Initial import for app-sci/prints

diff --git a/app-sci/prints/ChangeLog b/app-sci/prints/ChangeLog
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+++ b/app-sci/prints/ChangeLog
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+# ChangeLog for app-sci/prints
+# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/prints/ChangeLog,v 1.1 2004/06/25 03:34:12 ribosome Exp $
+
+*prints-37.0 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  prints-37.0.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54325
+

diff --git a/app-sci/prints/files/digest-prints-37.0 b/app-sci/prints/files/digest-prints-37.0
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+++ b/app-sci/prints/files/digest-prints-37.0
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+MD5 8d15b420f8fb946085364b95550557c9 newpr.lis.gz 1446
+MD5 0b250e6966d83573609d6afe3f6442ce prints37_0.all.fasta.Z 19434403
+MD5 750992359d84739bf9d08894271c34ad prints37_0.dat.gz 7145345
+MD5 4b25791302554f8ea87358156b2b6b89 prints37_0.lis.gz 30354
+MD5 72215bb4d79ba0e2503ecb6614f74834 prints37_0.nam.gz 584
+MD5 2472d9ba65b3bfc4cd054f18d5b26a67 prints37_0.vsn.gz 73

diff --git a/app-sci/prints/metadata.xml b/app-sci/prints/metadata.xml
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+++ b/app-sci/prints/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+       <maintainer>
+               <email>ribosome@gentoo.org</email>
+               <name>Olivier Fisette</name>
+       </maintainer>
+       <herd>sci</herd>
+       <longdescription>
+               A protein motif fingerprint database maintained at the University of
+               Manchester. A fingerprint is a group of conserved motifs used to
+               characterise a protein family; its diagnostic power is refined by
+               iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs
+               do not overlap, but are separated along a sequence, though they may be
+               contiguous in 3D-space. Fingerprints can encode protein folds and
+               functionalities more flexibly and powerfully than can single motifs,
+               full diagnostic potency deriving from the mutual context provided by
+               motif neighbours.
+       </longdescription>
+</pkgmetadata>

diff --git a/app-sci/prints/prints-37.0.ebuild b/app-sci/prints/prints-37.0.ebuild
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+++ b/app-sci/prints/prints-37.0.ebuild
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+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/prints/prints-37.0.ebuild,v 1.1 2004/06/25 03:34:12 ribosome Exp $
+
+DESCRIPTION="A protein motif fingerprint database"
+HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/newpr.lis.gz
+       ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.all.fasta.Z
+       ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.dat.gz
+       ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.lis.gz
+       ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.nam.gz
+       ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.vsn.gz"
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="no-emboss no-rawdb"
+
+S=${WORKDIR}
+
+src_compile() {
+       # Index the database for use with emboss if emboss is installed and
+       # the user did not explicitly request not to index the database.
+       if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
+               mkdir PRINTS
+               einfo "Indexing PRINTS for usage with EMBOSS."
+               EMBOSS_DATA=. printsextract -auto -infile prints37_0.dat || die \
+                       "Indexing PRINTS failed."
+       fi
+}
+
+src_install() {
+       if ! use no-rawdb; then
+               insinto /usr/share/${PN}
+               doins ${PN}37_0.{all.fasta,dat,lis,nam,vsn} newpr.lis
+       fi
+       if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
+               insinto /usr/share/EMBOSS/data/PRINTS
+               doins PRINTS/*
+       fi
+}

diff --git a/app-sci/prosite/Manifest b/app-sci/prosite/Manifest
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index 0000000..5a4ddce
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+++ b/app-sci/prosite/Manifest
@@ -0,0 +1,4 @@
+MD5 c3c532ef85f4907c38d40f425f3e3140 prosite-18.26.ebuild 1425
+MD5 db69308e5869d6521fd4b942f8dacd13 ChangeLog 455
+MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810
+MD5 93e518c7b278bf20d3d76135c4f9fc25 files/digest-prosite-18.26 281