# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.15 2010/03/11 08:17:02 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.16 2010/03/12 08:24:10 jlec Exp $
+
+*ccpn-2.1.3.1_p100312 (12 Mar 2010)
+
+ 12 Mar 2010; Justin Lecher (jlec) <jlec@j-schmitz.net>
+ -ccpn-2.1.3.1_p100226-r1.ebuild, -ccpn-2.1.3.1_p100227.ebuild,
+ -ccpn-2.1.3.1_p100303.ebuild, +ccpn-2.1.3.1_p100312.ebuild:
+ Python changes added, cleaned old versions
*ccpn-2.1.3.1_p100311 (11 Mar 2010)
DIST analysis2.1.3.tar.gz 18917835 RMD160 068fed988cb20d899266680f7dd7af2ca1ae2b46 SHA1 51d54036775cc271251c9deaf112903296db19e6 SHA256 6e614d0ab7d4ccaed9d5e0401f25a821c81def4bda28e1426f4112c521031e47
DIST analysis2.1.3_1.tar.gz 18932918 RMD160 5f19ea6fe47c2910d16fcba8d1a78f0e1dead731 SHA1 683bdfb17d14979eb6477aaa99e4c4af5003beb2 SHA256 bbc1ba5434f896d38b6745c1dc9adc470a78d3be7b879160edcd635a19228b74
DIST ccpn-update-100216.patch.bz2 37914 RMD160 92d2845f9a21a5ddc9fd71cf56928b61f497530c SHA1 de61701435675d10165826cf4cd590dca336cbb2 SHA256 13e062188e953ea62e779b7d89004ce103db61daf228cf6b9f7d3c77f39947fc
-DIST ccpn-update-100226.patch.bz2 10123 RMD160 09a1fbe8cb6c75e8e9c0b005de299b676133a29e SHA1 a6db57e094c334f06e3f8d155b628543259d61dd SHA256 8db4adda421a0fb2a0d94985bb8379321291b80a0d448f9b764590b7ff825f85
-DIST ccpn-update-100227.patch.bz2 10754 RMD160 bf822c074655c8b0e6f2cb92ebeb592cf1491a4d SHA1 fa704d5cae4aab72bdf08b6e75a576f01a368ec3 SHA256 411f131672f32cb7e0135eb2327043cebe7bf7329b107f3b0c70c0a20a45fa13
-DIST ccpn-update-100303.patch.bz2 14205 RMD160 d704c5582afa4ed9e68983462944bd1177b7a59f SHA1 73993e6e94dce14c6c245ef12c53179318dbecd0 SHA256 f68ba47e09b5d14e8dbb6aec46f8789d5038f6aa4151a9b8d5fef06207be6af6
DIST ccpn-update-100308.patch.bz2 30914 RMD160 5540c49a7e362f464dcc774431234490b6d7082b SHA1 ff72c1ace15c192779c2e59e27fca6944d696429 SHA256 25d9ee427f909cad0f19233963f19494649ed9c761005175d447bc4cd5e6907c
DIST ccpn-update-100311.patch.bz2 36925 RMD160 14e56026fa309b4011276dd07eee4c1292432ded SHA1 c505d95ffbb7af15fc906a2de14c572850e4ec00 SHA256 f0c3a1c48787097463491024ce31b410b984c2fd968371244e5f66d1c37f5c31
+DIST ccpn-update-100312.patch.bz2 37664 RMD160 ea0acb9ce906c1d3cd5578f35e514fb3cfa99ff6 SHA1 43a1cc93403744281a2d65c7d2e0c62ba4bf8df8 SHA256 4b9402cb46bfd23c2d832a9434d8fa597de1e82863d1516b4ee086aecac6a917
EBUILD ccpn-2.1.2.1_p100216.ebuild 4880 RMD160 e892baef0d74df30f40e5b393c893159bd08dda5 SHA1 e1a7a09588aa2f4e341e5d94f5260072dab10474 SHA256 7777534b663f05898cf40cc1f7114b2a6de38343fe5ab31f14d4c4c4f2456c47
EBUILD ccpn-2.1.3.1.ebuild 4977 RMD160 12969caf3118f10fd0bd794f58d31be3e5c60c03 SHA1 dcdd685d5321ed97ea821fa6799e35d9b287e9dd SHA256 b55eb637a743dd0ad6c1a31b623c1c814019dcfc45f734996d3dec34a0ab5033
-EBUILD ccpn-2.1.3.1_p100226-r1.ebuild 4987 RMD160 42c22f2a59502dceb18a32f5048699223bbbcc5d SHA1 f307c4c681d7118da50a08b70e34be1b300ec61a SHA256 f17620d06aa3b3d246852e6a17768feb897118199d6e1d8d47bb10617ae60ec6
-EBUILD ccpn-2.1.3.1_p100227.ebuild 4984 RMD160 381de136fafe9bcfdee6b8500dd1c465b1ddde2e SHA1 a9cb9540ebe8593cfcf57ca3ff7ad22df0120cb2 SHA256 b835bee95075191931436e486f0431cec2c7b53a2503fd3477900b52a4e47763
-EBUILD ccpn-2.1.3.1_p100303.ebuild 4968 RMD160 703861d3da368b696576cce61e99499f4dd9a387 SHA1 cb6780945522c5dc44930bfcefa093921e49787c SHA256 3449904be5a5e91a9b33162de7fdc62a392a612696b069ec1cb92163925ce4c6
EBUILD ccpn-2.1.3.1_p100308.ebuild 4968 RMD160 55570e8d965a301270dfbbeb525127c06a2fb13d SHA1 2e33e0da5337ff7fe2fcaf5f6c0cc0f0471714b9 SHA256 59fdc2733014cc89eaed8b3fe3692bfa1153d4697216b558c961ca6906a1f448
EBUILD ccpn-2.1.3.1_p100311.ebuild 4968 RMD160 4c28a74b04553b04bc23bc42061f6d90e260706d SHA1 9c660041c87d58046f0e464e1eb5621903cae0c1 SHA256 ef119ae533ec22f55dd2a7cd440a47829715833b792f217ec665358580912761
+EBUILD ccpn-2.1.3.1_p100312.ebuild 4968 RMD160 06dc5d340a5a6cbbc16fe796b293de1117b1f96e SHA1 ea99f4e1433ca2b007ae805d2c5ff22ca677fd3e SHA256 b78534f7ed6830d83c0f4d01d3fb3744fdb8c314f4fc3625bbe02471c69da964
EBUILD ccpn-2.1.3.ebuild 4975 RMD160 99530170d2323e58cd105a5a8e47c493d0fd765c SHA1 5c298bffe292915768357e8273a1fb3d05312fb3 SHA256 1f9701c42f9e9754f0d8dcb258e3e365ec31f4e8d99b5649376083b7ff87bbb9
-MISC ChangeLog 2732 RMD160 ad1654d5d0b7bb576262f8694199758695522f24 SHA1 8adab319c3f6158be5258de99a988091a2d7a7c4 SHA256 85431ba57dda20dc1321490f33138ea861cc98665d30883e3b9ef5712508edc5
+MISC ChangeLog 2999 RMD160 62d922c65f2ed3836c0a9d1f5ccc2f1871ecdb7e SHA1 1f3997a8cda8d418d9641cc90ac906110be4ae5a SHA256 e2e80c99d16ef66561c7e03d5bdcee1d31a63aaa313e8746ff8f157a94d2edfa
MISC metadata.xml 226 RMD160 0355d90bd8d1c106a19b136045ebdf970a0a2485 SHA1 1db0b2a470657641079d6613829df49a5c043ed6 SHA256 094a3ac740c81b9afbff3c855ba93cc20a593cad2392f6f4404715608a836fa1
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+++ /dev/null
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100226-r1.ebuild,v 1.2 2010/02/28 13:48:39 arfrever Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- opengl? ( virtual/glut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
+++ /dev/null
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100227.ebuild,v 1.2 2010/02/28 13:48:39 arfrever Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2:2.5"
-SUPPORT_PYTHON_ABIS="1"
-PYTHON_USE_WITH="ssl tk"
-
-inherit eutils portability python toolchain-funcs versionator
-
-PATCHSET="${PV##*_p}"
-MY_PN="${PN}mr"
-MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
-
-DESCRIPTION="The Collaborative Computing Project for NMR"
-SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
- [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentooexperimental.org/~jlec/distfiles/ccpn-update-${PATCHSET}.patch.bz2"
-HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
-
-SLOT="0"
-LICENSE="|| ( CCPN LGPL-2.1 )"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+opengl"
-
-RDEPEND="
- dev-lang/tk
- dev-python/numpy
- dev-tcltk/tix
- opengl? ( virtual/glut )"
-DEPEND="${RDEPEND}"
-RESTRICT_PYTHON_ABIS="2.4 3.*"
-
-RESTRICT="mirror"
-S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
-
-src_prepare() {
- [[ -n ${PATCHSET} ]] && \
- epatch "${WORKDIR}"/ccpn-update-${PATCHSET}.patch
-
- epatch "${FILESDIR}"/${MY_PV}-parallel.patch
- epatch "${FILESDIR}"/${MY_PV}-dynamics.patch
-
- local tk_ver
- local myconf
-
- tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
-
- if use opengl; then
- GLUT_NEED_INIT="-DNEED_GLUT_INIT"
- IGNORE_GL_FLAG=""
- GL_FLAG="-DUSE_GL_FALSE"
- GL_DIR="${EPREFIX}/usr"
- GL_LIB="-lglut -lGLU -lGL"
- GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
- GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
-
- else
- IGNORE_GL_FLAG="-DIGNORE_GL"
- GL_FLAG="-DUSE_GL_FALSE"
- fi
-
- GLUT_NOT_IN_GL=""
- GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
-
- python_copy_sources
-
- preparation() {
- sed \
- -e "s:/usr:${EPREFIX}/usr:g" \
- -e "s:^\(CC =\).*:\1 $(tc-getCC):g" \
- -e "s:^\(OPT_FLAG =\).*:\1 ${CFLAGS}:g" \
- -e "s:^\(LINK_FLAGS =.*\):\1 ${LDFLAGS}:g" \
- -e "s:^\(IGNORE_GL_FLAG =\).*:\1 ${IGNORE_GL_FLAG}:g" \
- -e "s:^\(GL_FLAG =\).*:\1 ${GL_FLAG}:g" \
- -e "s:^\(GLUT_NEED_INIT =\).*:\1 ${GLUT_NEED_INIT}:g" \
- -e "s:^\(GLUT_NOT_IN_GL =\).*:\1:g" \
- -e "s:^\(X11_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TCL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(TK_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- -e "s:^\(PYTHON_INCLUDE_FLAGS =\).*:\1 -I\$(PYTHON_DIR)/include/python$(python_get_version):g" \
- -e "s:^\(PYTHON_LIB =\).*:\1 -lpython$(python_get_version):g" \
- -e "s:^\(GL_LIB_FLAGS =\).*:\1 -L${EPREFIX}/usr/$(get_libdir):g" \
- c/environment_default.txt > c/environment.txt
- }
- python_execute_function -s preparation
-}
-
-src_compile() {
- building() {
- emake -C c all links
- }
- python_execute_function -s building
-}
-
-src_install() {
- local libdir
- local tkver
-
- libdir=$(get_libdir)
- tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
-
- for wrapper in analysis dangle dataShifter eci formatConverter pipe2azara; do
- sed -e "s:gentoo_sitedir:${EPREFIX}/$(python_get_sitedir -f):g" \
- -e "s:gentoolibdir:${EPREFIX}/usr/${libdir}:g" \
- -e "s:gentootk:${EPREFIX}/usr/${libdir}/tk${tkver}:g" \
- -e "s:gentootcl:${EPREFIX}/usr/${libdir}/tclk${tkver}:g" \
- -e "s:gentoopython:${EPREFIX}/usr/bin/python:g" \
- "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
- dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
- done
-
- installation() {
- local in_path
- local files
-
- in_path=$(python_get_sitedir)/${PN}
-
- for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
- sed \
- -e 's:#from __future__:from __future__:g' \
- -i ${i}
- done
-
- insinto ${in_path}
-
- dodir ${in_path}/c
-
- ebegin "Installing main files"
- doins -r data model python || die "main files installation failed"
- eend
-
- dohtml -r doc/* || die
- dosym ../../../../share/doc/${PF}/html ${in_path}/doc || die
-
- einfo "Adjusting permissions"
-
- files="ccpnmr/c/ContourFile.so
- ccpnmr/c/ContourLevels.so
- ccpnmr/c/ContourStyle.so
- ccpnmr/c/PeakList.so
- ccpnmr/c/SliceFile.so
- ccpnmr/c/WinPeakList.so
- ccpnmr/c/AtomCoordList.so
- ccpnmr/c/AtomCoord.so
- ccpnmr/c/Bacus.so
- ccpnmr/c/CloudUtil.so
- ccpnmr/c/DistConstraintList.so
- ccpnmr/c/DistConstraint.so
- ccpnmr/c/DistForce.so
- ccpnmr/c/Dynamics.so
- ccpnmr/c/Midge.so
- ccp/c/StructAtom.so
- ccp/c/StructBond.so
- ccp/c/StructStructure.so
- ccp/c/StructUtil.so
- memops/c/BlockFile.so
- memops/c/FitMethod.so
- memops/c/GlHandler.so
- memops/c/MemCache.so
- memops/c/PdfHandler.so
- memops/c/PsHandler.so
- memops/c/ShapeFile.so
- memops/c/StoreFile.so
- memops/c/StoreHandler.so
- memops/c/TkHandler.so"
-
- for FILE in ${files}; do
- fperms 755 ${in_path}/python/${FILE}
- done
- }
- python_execute_function -s installation
-}
-
-pkg_postinst() {
- python_mod_optimize ${PN}
-}
-
-pkg_postrm() {
- python_mod_cleanup ${PN}
-}
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100303.ebuild,v 1.1 2010/03/03 21:51:12 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.3.1_p100312.ebuild,v 1.1 2010/03/12 08:24:10 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2:2.5"
projects / gentoo.git / commitdiff