ksdssp is an open source implementation of the algorithm described in Wolfgang Kabsch...

Package-Manager: portage-2.2_rc65/cvs/Linux x86_64

diff --git a/sci-chemistry/ksdssp/ChangeLog b/sci-chemistry/ksdssp/ChangeLog
new file mode 100644 (file)
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--- /dev/null
+++ b/sci-chemistry/ksdssp/ChangeLog
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+# ChangeLog for sci-chemistry/ksdssp
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ksdssp/ChangeLog,v 1.1 2010/03/07 11:00:06 jlec Exp $
+
+*ksdssp-040728 (07 Mar 2010)
+
+  07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> +ksdssp-040728.ebuild,
+  +metadata.xml:
+  ksdssp is an open source implementation of the algorithm described in
+  Wolfgang Kabsch and Christian Sander, "Dictionary of Protein Secondary
+  Structure: Pattern Recognition of Hydrogen-Bonded and Geometrical
+  Features," Biopolymers, 22, 2577-2637 (1983).
+

diff --git a/sci-chemistry/ksdssp/Manifest b/sci-chemistry/ksdssp/Manifest
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+++ b/sci-chemistry/ksdssp/Manifest
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+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST ksdssp-040728.shar 104347 RMD160 5a6052c42434711e838187e82120bf73a04d539a SHA1 69b9b6c320dd45ab9b24c694148a156fed56b2e5 SHA256 0e47de4147724035519f9e845724407c472b99219bbb41c35f3ae1150ae8ef4c
+EBUILD ksdssp-040728.ebuild 991 RMD160 605aa8acd06b10756463a23afc6b9c841a3abfd7 SHA1 00368e7a6cb084daabc9bfbdfd5292a5381f61fa SHA256 95f9309de8d3832e4501761c883c55390a36bb4d9fb612780b125d2f4c2615d7
+MISC ChangeLog 597 RMD160 ff64c31105a9196c1b9f743b31d3888748109f20 SHA1 09f34ad87c3c623a0681c290169868b336b43da9 SHA256 33a49b854b3c9b0023cb7be58b49902f48d39017ab632913fec32c111ab3c967
+MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.14 (GNU/Linux)
+
+iEYEARECAAYFAkuThzsACgkQgAnW8HDreRZZuACePHTN2JF4WOYZnIGM25u8lWU8
+L38An3t79rkuypQOKUf3EuQcIwhhvXTb
+=H2Lk
+-----END PGP SIGNATURE-----

diff --git a/sci-chemistry/ksdssp/ksdssp-040728.ebuild b/sci-chemistry/ksdssp/ksdssp-040728.ebuild
new file mode 100644 (file)
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+++ b/sci-chemistry/ksdssp/ksdssp-040728.ebuild
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+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ksdssp/ksdssp-040728.ebuild,v 1.1 2010/03/07 11:00:06 jlec Exp $
+
+EAPI="3"
+
+inherit toolchain-funcs
+
+DESCRIPTION="ksdssp is an open source implementation of dssp"
+HOMEPAGE="http://www.cgl.ucsf.edu/Overview/software.html"
+SRC_URI="mirror://gentoo/${P}.shar"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="as-is"
+IUSE=""
+
+RDEPEND="sci-libs/libpdb++"
+DEPEND="
+       ${RDEPEND}
+       app-arch/sharutils"
+
+S="${WORKDIR}"/${PN}
+
+src_unpack() {
+       "${EPREFIX}"/usr/bin/unshar "${DISTDIR}"/${A}
+}
+
+src_compile() {
+       emake \
+               CXX="$(tc-getCXX)" \
+               PDBINCDIR="${EPREFIX}/usr/include/libpdb++" \
+               BINDIR="${EPREFIX}/usr/bin" \
+               .TARGET="${PN}.csh" \
+               .CURDIR="${S}" \
+               CC="$(tc-getCXX)" \
+               LINKER="$(tc-getCXX)" \
+               OPT="${CXXFLAGS}" \
+               LFLAGS="${LDFLAGS}" \
+               ${PN} ${PN}.csh || die
+}
+
+src_install() {
+       dobin ${PN}{,.csh} || die
+}

diff --git a/sci-chemistry/ksdssp/metadata.xml b/sci-chemistry/ksdssp/metadata.xml
new file mode 100644 (file)
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--- /dev/null
+++ b/sci-chemistry/ksdssp/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+</pkgmetadata>