# No revdeps, Removal in 30 days.
sci-chemistry/gabedit
-# David Seifert <soap@gentoo.org> (2020-01-21)
-# Last release over 13 years ago, depends on EOL gtkglext, no revdeps.
-# Bug #353119, #435676. Removal in 30 days.
-sci-chemistry/ghemical
-
# Michał Górny <mgorny@gentoo.org> (2020-01-16)
# The new version loses Python 2 support but does not introduce any real
# changes. Let's mask it to reduce the noise, and hopefully try to get
+++ /dev/null
-DIST ghemical-3.0.0.tar.gz 2196716 BLAKE2B 62008667c58cb058beb8eb3946bb96fb03aceff7cc93f64aecc697a7648946936208063b419aca57f740d5760a90d923d81f8cc8d80fb68bdf924b23cd2061b3 SHA512 d4dd0b063a4dea33fa7430e77a2da253c74079fd8b5f21e8c2b5da1383f3689b93305417e1bf0d4908b87c91afb33c3266dd6bd6fbcd768cc98614a3f730ee94
+++ /dev/null
-diff --git a/docs/user-docs/Makefile.am b/docs/user-docs/Makefile.am
-index 030f67c..dcb207b 100644
---- a/docs/user-docs/Makefile.am
-+++ b/docs/user-docs/Makefile.am
-@@ -1,6 +1,6 @@
- SUBDIRS = images
-
--helpfilesdir = $(datadir)/ghemical/@APPVERSION@/user-docs
-+helpfilesdir = $(datadir)/doc/ghemical-@APPVERSION@/html
- helpfiles_DATA = *.css *.html
-
- EXTRA_DIST = $(helpfiles_DATA)
-diff --git a/docs/user-docs/images/Makefile.am b/docs/user-docs/images/Makefile.am
-index fae0ffd..a569151 100644
---- a/docs/user-docs/images/Makefile.am
-+++ b/docs/user-docs/images/Makefile.am
-@@ -1,4 +1,4 @@
--helpimagesdir = $(datadir)/ghemical/@APPVERSION@/user-docs/images
-+helpimagesdir = $(datadir)/doc/ghemical-@APPVERSION@/html/images
- helpimages_DATA = *.png
-
- EXTRA_DIST = $(helpimages_DATA)
+++ /dev/null
-https://bugs.gentoo.org/687450
-
-project.h:210:14: error: friend declaration of ‘bool ReadGPR_OLD(project&, std::istream&, bool, bool)’ specifies default arguments and isn’t a definition [-fpermissive]
- 210 | friend bool ReadGPR_OLD(project &, istream &, bool, bool = false); ///< this is for the very old version.
- | ^~~~~~~~~~~
-
---- a/src/project.h
-+++ b/src/project.h
-@@ -122,6 +122,12 @@
- graphical user interface.
- */
-
-+class project;
-+bool ReadGPR_OLD(project &, istream &, bool, bool = false);
-+bool ReadGPR_v100(project &, istream &, bool, bool = false);
-+bool ReadGPR_v110(project &, istream &, bool, bool = false);
-+bool ReadGPR(project &, istream &, bool, bool = false);
-+
- class project :
- public custom_transformer_client,
- public model
-@@ -207,11 +213,11 @@
-
- // methods for file I/O : ReadGPR and WriteGPR are friend functions so that it would be easier to "borrow" them elsewhere...
- // ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-- friend bool ReadGPR_OLD(project &, istream &, bool, bool = false); ///< this is for the very old version.
-- friend bool ReadGPR_v100(project &, istream &, bool, bool = false); ///< this is for the version 1.00.
-- friend bool ReadGPR_v110(project &, istream &, bool, bool = false); ///< this is for the version 1.10.
-+ friend bool ReadGPR_OLD(project &, istream &, bool, bool); ///< this is for the very old version.
-+ friend bool ReadGPR_v100(project &, istream &, bool, bool); ///< this is for the version 1.00.
-+ friend bool ReadGPR_v110(project &, istream &, bool, bool); ///< this is for the version 1.10.
- /// This is an input function for the v1.11 ghemical file format.
-- friend bool ReadGPR(project &, istream &, bool, bool = false);
-+ friend bool ReadGPR(project &, istream &, bool, bool);
-
- friend void WriteGPR_v100(project &, ostream &); ///< this is for the version 1.00.
- /// This is an output function for the v1.11 ghemical file format.
+++ /dev/null
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools desktop
-
-DESCRIPTION="Chemical quantum mechanics and molecular mechanics"
-HOMEPAGE="http://bioinformatics.org/ghemical/"
-SRC_URI="http://bioinformatics.org/ghemical/download/current/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="openbabel seamonkey threads"
-
-RDEPEND="
- dev-libs/glib:2
- gnome-base/libglade:2.0
- sci-chemistry/mpqc
- >=sci-libs/libghemical-3.0.0:=
- >=x11-libs/liboglappth-1.0.0:=
- virtual/opengl
- x11-libs/pango:0=
- x11-libs/gtk+:2
- x11-libs/gtkglext:0=
- openbabel? ( sci-chemistry/openbabel )"
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-PATCHES=(
- "${FILESDIR}"/2.99.2-docs.patch
- "${FILESDIR}"/3.0.0-fix-gcc9.patch
-)
-
-src_prepare() {
- default
- eautoreconf
-}
-
-src_configure() {
- # With amd64, if you want gamess I recommend adding gamess and gtk-gamess to package.provided for now.
-
- # Change the built-in help browser.
- sed -e "s|mozilla|$(usex seamonkey seamonkey firefox)|g" \
- -i src/gtk_app.cpp || die "sed failed for $(usex seamonkey seamonkey firefox)!"
-
- econf \
- $(use_enable openbabel) \
- $(use_enable threads)
-}
-
-src_install() {
- default
- make_desktop_entry ghemical Ghemical /usr/share/ghemical/${PV}/pixmaps/ghemical.png
-}
+++ /dev/null
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
-Ghemical supports both quantum-mechanics (semi-empirical and ab initio) models
-and molecular mechanics models (there is an experimental Tripos 5.2-like force
-field for organic molecules). Also a tool for reduced protein models is
-included. Geometry optimization, molecular dynamics and a large set of
-visualization tools are currently available.
-</longdescription>
- <use>
- <flag name="openbabel">Use <pkg>sci-chemistry/openbabel</pkg> for file
- conversions</flag>
- <flag name="seamonkey">Add support for the Seamonkey web-browser</flag>
- </use>
-</pkgmetadata>
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