# ChangeLog for sci-chemistry/apbs
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.30 2010/05/12 13:17:41 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.31 2010/06/09 06:37:14 jlec Exp $
+
+ 09 Jun 2010; Justin Lecher <jlec@gentoo.org> -apbs-1.2.0.ebuild,
+ -files/apbs-1.2.0-install-fix.patch, -apbs-1.2.1b.ebuild,
+ -apbs-1.2.1b-r1.ebuild:
+ removed old version which having problems with PYTHON ABIs stuff
12 May 2010; Justin Lecher (jlec) <jlec@j-schmitz.net>
apbs-1.2.1b-r3.ebuild:
AUX apbs-1.0.0-libmaloc-noinstall.patch 2230 RMD160 983d431fbe8af9aab163f3160521339fa0fc68d9 SHA1 9d5f2685d78c73f404899eca24cee4d1e5cb140d SHA256 729b836d5539a3c6328905c5e69403fd9386eb85199eb5702c90b5ec88bc5ef0
AUX apbs-1.0.0-openmpi.patch 1458 RMD160 27e786dcb212348e14400442d11543038a1015b4 SHA1 40e45496d78c72a8b9169af623924ee74c5ff2a5 SHA256 ab2e1303c3bdcfc78c11b13ea2f99c4a8e81cb6d6f89c008815ecc20150863bf
AUX apbs-1.2.0-contrib.patch 382 RMD160 4c0c75e57fb6a0c298606d87785a5b9daa8db457 SHA1 653295c9ff7ac075613dd82ce332b41b0e2ea37e SHA256 0b2a1c518c66de6010954f101c1622cfd570bbfcc4774d98607174e57e67f1b3
-AUX apbs-1.2.0-install-fix.patch 1417 RMD160 4dbf96c23c2c2b150d48dc2983c293aac8be5492 SHA1 591339b9f994ee3853f6f6c38ab2cb4a280d3216 SHA256 cb805d3b12b7457c9c9a28277159516b5ea3724b6c5647b567c9683865a160b8
AUX apbs-1.2.0-link.patch 1716 RMD160 904e7123d32f628171aa728a761c9d7fd95e967d SHA1 63265d0c7c636749292d90efe6a989e7e48251b6 SHA256 37faa758d6439f22853aa9d4524e3e8770437d3986e00649a193b0a97f369bba
AUX apbs-1.2.1b-autoconf-2.64.patch 952 RMD160 80ed2f351c52764b1c3221b4f5f0e152652c8637 SHA1 dbe725035299182efe82d6ab4a8dcb721601592c SHA256 d9855b84b5b3ca404c463ad9ada7d75d7076d11a929b53bd61f42ed427be9984
AUX apbs-1.2.1b-install-fix.patch 1467 RMD160 0ed57415822554b888f642b4e3afb296418ead1e SHA1 b7de15116e16c440c7b689182fa465c55fb4a628 SHA256 f67dfdbdff6f89c616c01890efcb059e104be94a33bc8a538275fa4360831d9f
AUX apbs-1.2.1b-openmp.patch 1431 RMD160 d72a7dad56c1d2ce4e13c4eb03b2cb5e58ebcdf0 SHA1 94ca5f758749c3d71ab783041624256b8d4e8092 SHA256 ae6ba8acc1de36372e3e2af00bac23beca6354cbfbcf2140d9c65bf8e2c3bff6
DIST apbs-1.0.0-source.tar.gz 11541303 RMD160 1eeb79f93a591835281bf8395308cddc065dac93 SHA1 fbcfe664defb09165e0eae3ff913a9d5a17cb27e SHA256 bd3803183ffb2bede9fca242d5432acb60b3cb8668eeccdbbced69aaf7a57604
-DIST apbs-1.2-source.tar.gz 10593537 RMD160 62cb82da9ca5276c3d7127a4d1f9737747dac315 SHA1 43e766a8c6166288c25229e0615a72dca5e8a3b5 SHA256 b8b74d80f8b4e553cd2e51727efc79436152cd4f5e02be076e7cdf994aa5424e
DIST apbs-1.2.1b-source.tar.gz 40647966 RMD160 4ba1f72a7f9adcf7b283dc18743488143025b398 SHA1 dc3e6933a987ff9fdf88db510db79b3dacb100d6 SHA256 7d088def1ed7689127eb64014ea44069b9d7bfc995941fe5800ff753d48c87be
EBUILD apbs-1.0.0-r1.ebuild 1995 RMD160 0efbe531fe27749a65a23d17958c411bcd15ad74 SHA1 9ff5761e0d8d01cdb49518cdf5d3372977c0f9ad SHA256 34b2bd026da29cec1224c91d9b4c86bdac3bec95747e167b2127aa329de2f4b2
-EBUILD apbs-1.2.0.ebuild 2514 RMD160 860994d50bc8a5d1657a5f3f6fa0dfef3c1e76e4 SHA1 d917e489ecc0e245e02796097a6aef07617e73ff SHA256 4f4229963c163b60012c091e84cf456a1215680358e3852174f2a972554546bf
-EBUILD apbs-1.2.1b-r1.ebuild 2666 RMD160 147ace2cedc979ae431e0e2e83ace236c320c7a0 SHA1 7889ebff83224c531315123dae972d3e503270bf SHA256 c9b404e8870a7461b38139785f62a05db8227464fc6b6bd918467655ed959b8e
EBUILD apbs-1.2.1b-r3.ebuild 3447 RMD160 779c3a7076ae8d907b6076ff14538d6aad5eb753 SHA1 92911c7a777bbfddd709d5dd2ad58b415b56f30d SHA256 ac3222c4c52f9bb2c66cf11f76180a9cc93863a1d8c21a6a2dfcf6d34203ea74
-EBUILD apbs-1.2.1b.ebuild 2583 RMD160 03d49d8d7d7a5a7ab71164e40bdde4a0c3e8632e SHA1 7712bc2d3faed84eb914d7466769be38076d11ed SHA256 9fa004e87205630e756762a82e6f6ffa969d77970aab2210b9688a8a295ef2a7
-MISC ChangeLog 5202 RMD160 6a788f62d8f810f76159aa1e7406c8acde6eee7c SHA1 c3c6f659033e558707e0a6dd5cbdccd5347a5f9b SHA256 711d1dde674183e109f18ac74e6ecc47607f5d6c7d9ea313f6e8db00ee4c5308
+MISC ChangeLog 5423 RMD160 c0a79801a7d9dbe0b2c4cd65a7386f169fe6062b SHA1 3a8c3e878710f92b351cd0c891b2a8c2c5dda1e2 SHA256 96d9312e020742d808b06d0954ac901fea98dce6555b29b1aae2cc9af5216b4d
MISC metadata.xml 547 RMD160 7df9b626591272a0875025ac69614734ebeaa886 SHA1 7fb86e4654460def273914edb38551efbee4facc SHA256 49c4f98a836f53297ed0efc680613a595f149b92a864ed3e7e329f93ea17116f
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+++ /dev/null
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.2.0.ebuild,v 1.1 2009/11/03 05:30:06 markusle Exp $
-
-EAPI="2"
-
-inherit eutils fortran autotools python versionator flag-o-matic
-
-MY_PV=$(get_version_component_range 1-2)
-MY_P="${PN}-${MY_PV}-source"
-S="${WORKDIR}"/"${MY_P}"
-
-DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
-LICENSE="BSD"
-HOMEPAGE="http://apbs.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
-
-SLOT="0"
-IUSE="arpack blas doc mpi python openmp"
-KEYWORDS="~x86 ~amd64 ~ppc"
-
-DEPEND="dev-libs/maloc[mpi=]
- blas? ( virtual/blas )
- python? ( dev-lang/python )
- sys-libs/readline
- arpack? ( sci-libs/arpack )
- mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-FORTRAN="g77 gfortran ifc"
-
-src_prepare() {
- python_version
-
- epatch "${FILESDIR}"/${P}-install-fix.patch
- epatch "${FILESDIR}"/${P}-contrib.patch
- epatch "${FILESDIR}"/${P}-link.patch
- sed "s:GENTOO_PKG_NAME:${PN}:g" \
- -i Makefile.am || die "Cannot correct package name"
- eautoreconf
-}
-
-src_configure() {
- local myconf="--docdir=/usr/share/doc/${PF}"
- use blas && myconf="${myconf} --with-blas=-lblas"
- use arpack && myconf="${myconf} --with-arpack=/usr/$(get_libdir)"
-
- # check which mpi version is installed and tell configure
- if use mpi; then
- export CC="/usr/bin/mpicc"
- export F77="/usr/bin/mpif77"
-
- if has_version sys-cluster/mpich; then
- myconf="${myconf} --with-mpich=/usr"
- elif has_version sys-cluster/mpich2; then
- myconf="${myconf} --with-mpich2=/usr"
- elif has_version sys-cluster/lam-mpi; then
- myconf="${myconf} --with-lam=/usr"
- elif has_version sys-cluster/openmpi; then
- myconf="${myconf} --with-openmpi=/usr"
- fi
- fi || die "Failed to select proper mpi implementation"
-
- # apbs' configure's openmp detection is broken; we'll
- # work around this until it is fixed
- if use openmp; then
- append-flags -fopenmp
- else
- myconf="${myconf} --disable-openmp"
- fi
-
- econf $(use_enable python) \
- --disable-maloc-rebuild \
- ${myconf} || die "configure failed"
-}
-
-src_compile() {
- emake -j1 || die "make failed"
-}
-
-src_test() {
- cd examples && make test \
- || die "Tests failed"
-}
-
-src_install() {
- emake -j1 DESTDIR="${D}" install \
- || die "make install failed"
-
- dodoc AUTHORS INSTALL README NEWS ChangeLog \
- || die "Failed to install docs"
-
- if use doc; then
- dohtml -r doc/* || die "Failed to install html docs"
- fi
-}
+++ /dev/null
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.2.1b-r1.ebuild,v 1.1 2010/02/20 09:33:57 jlec Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils fortran autotools python versionator flag-o-matic
-
-MY_PV=$(get_version_component_range 1-3)
-MY_P="${PN}-${MY_PV}"
-S="${WORKDIR}"/"${MY_P}-source"
-
-DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
-LICENSE="BSD"
-HOMEPAGE="http://apbs.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
-
-SLOT="0"
-IUSE="arpack blas doc mpi python openmp"
-KEYWORDS="~x86 ~amd64 ~ppc ~amd64-linux ~x86-linux"
-
-DEPEND="dev-libs/maloc[mpi=]
- blas? ( virtual/blas )
- python? ( dev-lang/python )
- sys-libs/readline
- arpack? ( sci-libs/arpack )
- mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-FORTRAN="g77 gfortran ifc"
-
-src_prepare() {
- epatch "${FILESDIR}"/${PN}-1.2.0-install-fix.patch
- epatch "${FILESDIR}"/${PN}-1.2.0-contrib.patch
- epatch "${FILESDIR}"/${PN}-1.2.0-link.patch
- epatch "${FILESDIR}"/${P}-autoconf-2.64.patch
- sed "s:GENTOO_PKG_NAME:${PN}:g" \
- -i Makefile.am || die "Cannot correct package name"
- eautoreconf
-}
-
-src_configure() {
- local myconf="--docdir=${EPREFIX}/usr/share/doc/${PF}"
- use blas && myconf="${myconf} --with-blas=-lblas"
- use arpack && myconf="${myconf} --with-arpack=${EPREFIX}/usr/$(get_libdir)"
-
- # check which mpi version is installed and tell configure
- if use mpi; then
- export CC="${EPREFIX}/usr/bin/mpicc"
- export F77="${EPREFIX}/usr/bin/mpif77"
-
- if has_version sys-cluster/mpich; then
- myconf="${myconf} --with-mpich=${EPREFIX}/usr"
- elif has_version sys-cluster/mpich2; then
- myconf="${myconf} --with-mpich2=${EPREFIX}/usr"
- elif has_version sys-cluster/lam-mpi; then
- myconf="${myconf} --with-lam=${EPREFIX}/usr"
- elif has_version sys-cluster/openmpi; then
- myconf="${myconf} --with-openmpi=${EPREFIX}/usr"
- fi
- fi || die "Failed to select proper mpi implementation"
-
- # apbs' configure's openmp detection is broken; we'll
- # work around this until it is fixed
- if use openmp; then
- append-flags -fopenmp
- else
- myconf="${myconf} --disable-openmp"
- fi
-
- econf $(use_enable python) \
- --disable-maloc-rebuild \
- ${myconf}
-}
-
-src_compile() {
- emake -j1 || die "make failed"
-}
-
-src_test() {
- cd examples && make test \
- || die "Tests failed"
-}
-
-src_install() {
- emake -j1 DESTDIR="${D}" install \
- || die "make install failed"
-
- dodoc AUTHORS INSTALL README NEWS ChangeLog \
- || die "Failed to install docs"
-
- if use doc; then
- dohtml -r doc/* || die "Failed to install html docs"
- fi
-}
+++ /dev/null
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.2.1b.ebuild,v 1.3 2010/02/20 09:33:57 jlec Exp $
-
-EAPI="2"
-
-inherit eutils fortran autotools python versionator flag-o-matic
-
-MY_PV=$(get_version_component_range 1-3)
-MY_P="${PN}-${MY_PV}"
-S="${WORKDIR}"/"${MY_P}-source"
-
-DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
-LICENSE="BSD"
-HOMEPAGE="http://apbs.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
-
-SLOT="0"
-IUSE="arpack blas doc mpi python openmp"
-KEYWORDS="~x86 ~amd64 ~ppc"
-
-DEPEND="dev-libs/maloc[mpi=]
- blas? ( virtual/blas )
- python? ( dev-lang/python )
- sys-libs/readline
- arpack? ( sci-libs/arpack )
- mpi? ( virtual/mpi )"
-RDEPEND="${DEPEND}"
-
-FORTRAN="g77 gfortran ifc"
-
-src_prepare() {
- python_version
-
- epatch "${FILESDIR}"/${PN}-1.2.0-install-fix.patch
- epatch "${FILESDIR}"/${PN}-1.2.0-contrib.patch
- epatch "${FILESDIR}"/${PN}-1.2.0-link.patch
- epatch "${FILESDIR}"/${P}-autoconf-2.64.patch
- sed "s:GENTOO_PKG_NAME:${PN}:g" \
- -i Makefile.am || die "Cannot correct package name"
- eautoreconf
-}
-
-src_configure() {
- local myconf="--docdir=/usr/share/doc/${PF}"
- use blas && myconf="${myconf} --with-blas=-lblas"
- use arpack && myconf="${myconf} --with-arpack=/usr/$(get_libdir)"
-
- # check which mpi version is installed and tell configure
- if use mpi; then
- export CC="/usr/bin/mpicc"
- export F77="/usr/bin/mpif77"
-
- if has_version sys-cluster/mpich; then
- myconf="${myconf} --with-mpich=/usr"
- elif has_version sys-cluster/mpich2; then
- myconf="${myconf} --with-mpich2=/usr"
- elif has_version sys-cluster/lam-mpi; then
- myconf="${myconf} --with-lam=/usr"
- elif has_version sys-cluster/openmpi; then
- myconf="${myconf} --with-openmpi=/usr"
- fi
- fi || die "Failed to select proper mpi implementation"
-
- # apbs' configure's openmp detection is broken; we'll
- # work around this until it is fixed
- if use openmp; then
- append-flags -fopenmp
- else
- myconf="${myconf} --disable-openmp"
- fi
-
- econf $(use_enable python) \
- --disable-maloc-rebuild \
- ${myconf} || die "configure failed"
-}
-
-src_compile() {
- emake -j1 || die "make failed"
-}
-
-src_test() {
- cd examples && make test \
- || die "Tests failed"
-}
-
-src_install() {
- emake -j1 DESTDIR="${D}" install \
- || die "make install failed"
-
- dodoc AUTHORS INSTALL README NEWS ChangeLog \
- || die "Failed to install docs"
-
- if use doc; then
- dohtml -r doc/* || die "Failed to install html docs"
- fi
-}
+++ /dev/null
-diff -Naur apbs-1.2-source/Makefile.am apbs-1.2-source.new/Makefile.am
---- apbs-1.2-source/Makefile.am 2009-10-14 13:20:55.000000000 -0400
-+++ apbs-1.2-source.new/Makefile.am 2009-11-02 23:31:41.000000000 -0500
-@@ -28,10 +28,19 @@
- -rm -f ./bin/apbs
-
- install-data-local:
-- mkdir -p ${prefix}/share
-- -cp -rf examples ${prefix}/share
-- -cp -rf doc ${prefix}/share
-- -cp -rf tools ${prefix}/share
-+ mkdir -p $(DESTDIR)${prefix}/share/GENTOO_PKG_NAME/examples
-+ mkdir -p $(DESTDIR)${prefix}/share/GENTOO_PKG_NAME/tools
-+ -rm -f doc/LICENSE.txt
-+ -rm -f tools/manip/*.pyc
-+ -rm -f tools/**/*.o
-+ -rm -f tools/**/Makefile*
-+ -rm -f tools/**/**/*.o
-+ -rm -f tools/**/**/Makefile*
-+ -rm -f tools/Makefile*
-+ -rm -f examples/Makefile*
-+ -rm -f examples/**/Makefile*
-+ -cp -rf examples $(DESTDIR)${prefix}/share/GENTOO_PKG_NAME/
-+ -cp -rf tools $(DESTDIR)${prefix}/share/GENTOO_PKG_NAME/
-
- test:
- cd examples; make test
-diff -Naur apbs-1.2-source/bin/Makefile.am apbs-1.2-source.new/bin/Makefile.am
---- apbs-1.2-source/bin/Makefile.am 2009-10-14 13:20:48.000000000 -0400
-+++ apbs-1.2-source.new/bin/Makefile.am 2009-11-02 23:31:15.000000000 -0500
-@@ -40,6 +40,4 @@
- include_HEADERS = routines.h
-
- install-data-local:
-- -cp -p ${top_apbsdir}/bin/ApbsClient.py ${prefix}/bin
-- -chmod 755 ${prefix}/bin/ApbsClient.py
-- -rm -f ${prefix}/bin/wsdl2py
-\ No newline at end of file
-+ -rm -f $(DESTDIR)${prefix}/bin/wsdl2py
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