New version

Package-Manager: portage-2.0.51.22-r3

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index 4528735c4bcb2377bda16856db6828321c57242b..76f016d0886ef2aa495ebc16ff135c905bcedb26 100644 (file)
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/prosite
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.51 2005/10/18 13:47:17 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.52 2005/11/07 19:51:16 ribosome Exp $
+
+*prosite-19.13 (07 Nov 2005)
+
+  07 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +prosite-19.13.ebuild:
+  New version.
 
 *prosite-19.12 (18 Oct 2005)
 

diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest
index dad9d5efd45ec5d21ca8578baf5c714ba12c6343..bfaf3e28047ee4f76dfb2d354821e33c684dfb3d 100644 (file)
--- a/sci-biology/prosite/Manifest
+++ b/sci-biology/prosite/Manifest
@@ -1,4 +1,5 @@
 MD5 324f25c7e64f0b16c397bc5b21a5991a prosite-19.11.ebuild 1091
+MD5 851c32a05d28c8253c27bd0ccc80dabc prosite-19.13.ebuild 1246
 MD5 9431707b2855909119752ded034ad2db prosite-19.10.ebuild 1087
 MD5 8fa2b3fde216b5b0abdc36962cf355fe ChangeLog 8857
 MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810
@@ -6,3 +7,4 @@ MD5 851c32a05d28c8253c27bd0ccc80dabc prosite-19.12.ebuild 1246
 MD5 10437130b20baaac5ed4b4f6d3b4c8b6 files/digest-prosite-19.10 67
 MD5 76de17f75bb2711010384038f2f0a2bc files/digest-prosite-19.11 67
 MD5 f910141ce9f0c61b5b84c488164a8751 files/digest-prosite-19.12 67
+MD5 0d50ead2db740fdbfad278fa81bfbca4 files/digest-prosite-19.13 67

diff --git a/sci-biology/prosite/files/digest-prosite-19.13 b/sci-biology/prosite/files/digest-prosite-19.13
new file mode 100644 (file)
index 0000000..1007908
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-19.13
@@ -0,0 +1 @@
+MD5 64b14fe3405a51138080be3423a5b4ac prosite-19.13.tar.bz2 2659264

diff --git a/sci-biology/prosite/prosite-19.13.ebuild b/sci-biology/prosite/prosite-19.13.ebuild
new file mode 100644 (file)
index 0000000..84fba37
--- /dev/null
+++ b/sci-biology/prosite/prosite-19.13.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.13.ebuild,v 1.1 2005/11/07 19:51:16 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+LICENSE="swiss-prot"
+HOMEPAGE="http://ca.expasy.org/prosite"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )"
+
+src_compile() {
+       if use emboss; then
+               mkdir PROSITE
+               echo
+               einfo "Indexing PROSITE for usage with EMBOSS."
+               EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \
+                       "Indexing PROSITE failed."
+               echo
+       fi
+}
+
+src_install() {
+       if ! use minimal; then
+               insinto /usr/share/${PN}
+               doins ${PN}.{doc,dat,lis} || die "Installing raw database failed."
+       fi
+       dodoc *.txt || die "Documentation installation failed."
+       dohtml *.htm || die "HTML documentation installation failed."
+       if use emboss; then
+               insinto /usr/share/EMBOSS/data/PROSITE
+               doins PROSITE/* || die "Installing EMBOSS data files failed."
+       fi
+}

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 31c52fe589d6ab9442b1b285be0d2d3d897bb1ff..eb77c3af423b33fbd76038701f9f60289b0b54fe 100644 (file)
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.39 2005/10/18 01:13:07 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.40 2005/11/07 19:53:36 ribosome Exp $
+
+*rebase-511 (07 Nov 2005)
+
+  07 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +rebase-511.ebuild:
+  New version.
 
   18 Oct 2005; Olivier Fisette <ribosome@gentoo.org> rebase-510.ebuild:
   Ebuild clean-up.

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 0ecc77d8e62ca00784d67be32d9448b3e81042ab..a73db1f03ae0a7c96fd1cd5e9188fc14d56ca8b0 100644 (file)
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,6 +1,8 @@
 MD5 8e3a296c79e6b9747f0bc4ebed679afc rebase-510.ebuild 1202
+MD5 8e3a296c79e6b9747f0bc4ebed679afc rebase-511.ebuild 1202
 MD5 69b1a343f30e72fad61432c2246b4c28 rebase-509.ebuild 1099
 MD5 b1f1c9744036cdd7d756a74a110791df ChangeLog 5954
 MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
 MD5 8b72021e3a53e0c9ab7acaf2d016637e files/digest-rebase-509 63
 MD5 c9253e81b3d46b0f4226ff56b61f4313 files/digest-rebase-510 63
+MD5 de0923d154ca7a32f45ee6bb9d3a40c4 files/digest-rebase-511 63

diff --git a/sci-biology/rebase/files/digest-rebase-511 b/sci-biology/rebase/files/digest-rebase-511
new file mode 100644 (file)
index 0000000..d885185
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-511
@@ -0,0 +1 @@
+MD5 6b53178dba38317b0173943213e745b2 rebase-511.tar.bz2 181327

diff --git a/sci-biology/rebase/rebase-511.ebuild b/sci-biology/rebase/rebase-511.ebuild
new file mode 100644 (file)
index 0000000..b9f4714
--- /dev/null
+++ b/sci-biology/rebase/rebase-511.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-511.ebuild,v 1.1 2005/11/07 19:53:36 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+
+src_compile() {
+       if use emboss; then
+               echo
+               einfo "Indexing ${PN} for usage with EMBOSS."
+               mkdir REBASE
+               EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+                       -protofile proto.${PV} || die "Indexing ${PN} failed."
+               echo
+       fi
+}
+
+src_install() {
+       if ! use minimal; then
+               insinto /usr/share/${PN}
+               doins withrefm.${PV} proto.${PV} || die \
+                       "Failed to install raw database."
+       fi
+       newdoc REBASE.DOC README || die "Failed to install documentation."
+       if use emboss; then
+               insinto /usr/share/EMBOSS/data/REBASE
+               doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \
+                       "Failed to install EMBOSS data files."
+       fi
+}