Moving to sci-biology/prosite

diff --git a/app-sci/prosite/ChangeLog b/app-sci/prosite/ChangeLog
deleted file mode 100644 (file)
index 3db7b51..0000000
--- a/app-sci/prosite/ChangeLog
+++ /dev/null
@@ -1,52 +0,0 @@
-# ChangeLog for app-sci/prosite
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/ChangeLog,v 1.9 2004/12/14 00:45:03 ribosome Exp $
-
-*prosite-18.41 (13 Dec 2004)
-
-  13 Dec 2004; Olivier Fisette <ribosome@gentoo.org> prosite-18.40.ebuild,
-  +prosite-18.41.ebuild:
-  New version: 18.41. Added 18.40 to x86.
-
-*prosite-18.40 (23 Nov 2004)
-
-  23 Nov 2004; Olivier Fisette <ribosome@gentoo.org> prosite-18.39.ebuild,
-  +prosite-18.40.ebuild:
-  New version: 18.40. Added 18.39 to x86.
-
-*prosite-18.39 (08 Nov 2004)
-
-  08 Nov 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.36.ebuild,
-  prosite-18.38.ebuild, +prosite-18.39.ebuild:
-  New version (18.39). Added 18.38 to x86. Removed obsolete version.
-
-*prosite-18.38 (30 Oct 2004)
-
-  30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.32.ebuild,
-  prosite-18.36.ebuild, +prosite-18.38.ebuild:
-  Removed obsolete version (18.32). Added to x86 (18.36). New version (18.38).
-
-*prosite-18.36 (29 Sep 2004)
-
-  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -prosite-18.26.ebuild,
-  prosite-18.32.ebuild, +prosite-18.36.ebuild:
-  Added x86 to 18.32. New version 18.36. Removed old version.
-
-*prosite-18.32 (10 Aug 2004)
-
-  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org>
-  prosite-18.32.ebuild:
-  Updated package.
-  prosite-18.26.ebuild:
-  Added to x86.
-
-  26 Jun 2004; David Holm <dholm@gentoo.org> prosite-18.26.ebuild:
-  Added to ~ppc.
-
-*prosite-18.26 (24 Jun 2004)
-
-  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
-  prosite-18.26.ebuild, metadata.xml :
-  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
-  Reference: Gentoo Bugzilla, bug #54326
-

diff --git a/app-sci/prosite/Manifest b/app-sci/prosite/Manifest
deleted file mode 100644 (file)
index 552afc4..0000000
--- a/app-sci/prosite/Manifest
+++ /dev/null
@@ -1,10 +0,0 @@
-MD5 ad15788d597d8132164264bf5a47152e prosite-18.41.ebuild 1053
-MD5 1dc5f78c8c1ddac5f64b607d3415258e prosite-18.39.ebuild 1052
-MD5 1f57fc61b02617b80c7a46013804997e prosite-18.40.ebuild 1052
-MD5 9e6b6b03257c738eef4fc8d1244c10a4 ChangeLog 1717
-MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810
-MD5 c04f92d03ee5c94d9d769acfb3c9a949 prosite-18.38.ebuild 1052
-MD5 681e2770cee55b9f73f52416d5afff8b files/digest-prosite-18.38 67
-MD5 be30a2901bbe78916e8e5ba3121a7262 files/digest-prosite-18.39 67
-MD5 72e0289273b3085b31e4244ba04f1b13 files/digest-prosite-18.40 67
-MD5 9c2f10f8894ca2905205055e4b8d0063 files/digest-prosite-18.41 67

diff --git a/app-sci/prosite/files/digest-prosite-18.38 b/app-sci/prosite/files/digest-prosite-18.38
deleted file mode 100644 (file)
index d0aa4f2..0000000
--- a/app-sci/prosite/files/digest-prosite-18.38
+++ /dev/null
@@ -1 +0,0 @@
-MD5 50e94ad7380dc99ff3c6ecca4591b168 prosite-18.38.tar.bz2 2993998

diff --git a/app-sci/prosite/files/digest-prosite-18.39 b/app-sci/prosite/files/digest-prosite-18.39
deleted file mode 100644 (file)
index cd2c0bb..0000000
--- a/app-sci/prosite/files/digest-prosite-18.39
+++ /dev/null
@@ -1 +0,0 @@
-MD5 1cbc9e4d8bed13494cfd513c98298b34 prosite-18.39.tar.bz2 2999823

diff --git a/app-sci/prosite/files/digest-prosite-18.40 b/app-sci/prosite/files/digest-prosite-18.40
deleted file mode 100644 (file)
index 287302f..0000000
--- a/app-sci/prosite/files/digest-prosite-18.40
+++ /dev/null
@@ -1 +0,0 @@
-MD5 fd7ba3d6b00474d22cc0f3ed12ea986d prosite-18.40.tar.bz2 3021114

diff --git a/app-sci/prosite/files/digest-prosite-18.41 b/app-sci/prosite/files/digest-prosite-18.41
deleted file mode 100644 (file)
index 0d3e161..0000000
--- a/app-sci/prosite/files/digest-prosite-18.41
+++ /dev/null
@@ -1 +0,0 @@
-MD5 682d5ce408604a01fa7c6b3c58c3a5b8 prosite-18.41.tar.bz2 3045746

diff --git a/app-sci/prosite/metadata.xml b/app-sci/prosite/metadata.xml
deleted file mode 100644 (file)
index bd40892..0000000
--- a/app-sci/prosite/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-       <maintainer>
-               <email>ribosome@gentoo.org</email>
-               <name>Olivier Fisette</name>
-       </maintainer>
-       <herd>sci</herd>
-       <longdescription>
-               A protein families and domains database maintained at the Swiss
-               Institude for Bioinformatics. It consists of biologically significant
-               sites, patterns and profiles that help to reliably identify to which
-               known protein family (if any) a new sequence belongs. PROSITE currently
-               contains patterns and profiles specific for more than a thousand
-               protein families or domains. Each of these signatures comes with
-               documentation providing background information on the structure and
-               function of these proteins.
-       </longdescription>
-</pkgmetadata>

diff --git a/app-sci/prosite/prosite-18.38.ebuild b/app-sci/prosite/prosite-18.38.ebuild
deleted file mode 100644 (file)
index 519a0bf..0000000
--- a/app-sci/prosite/prosite-18.38.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.38.ebuild,v 1.2 2004/11/09 02:25:06 ribosome Exp $
-
-DESCRIPTION="A protein families and domains database"
-HOMEPAGE="http://ca.expasy.org/${PN}"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="swiss-prot"
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-src_compile() {
-       # Index the database for use with EMBOSS if EMBOSS is installed and
-       # the user did not explicitly request not to index the database.
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               mkdir PROSITE
-               einfo "Indexing PROSITE for usage with EMBOSS."
-               EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
-                       "Indexing PROSITE failed."
-       fi
-}
-
-src_install() {
-       if ! use no-rawdb; then
-               insinto /usr/share/${PN}
-               doins ${PN}.{doc,dat,lis}
-       fi
-       dodoc *.txt
-       dohtml prosuser.htm
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               insinto /usr/share/EMBOSS/data/PROSITE
-               doins PROSITE/*
-       fi
-}

diff --git a/app-sci/prosite/prosite-18.39.ebuild b/app-sci/prosite/prosite-18.39.ebuild
deleted file mode 100644 (file)
index 542cd02..0000000
--- a/app-sci/prosite/prosite-18.39.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.39.ebuild,v 1.2 2004/11/23 20:20:24 ribosome Exp $
-
-DESCRIPTION="A protein families and domains database"
-HOMEPAGE="http://ca.expasy.org/${PN}"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="swiss-prot"
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-src_compile() {
-       # Index the database for use with EMBOSS if EMBOSS is installed and
-       # the user did not explicitly request not to index the database.
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               mkdir PROSITE
-               einfo "Indexing PROSITE for usage with EMBOSS."
-               EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
-                       "Indexing PROSITE failed."
-       fi
-}
-
-src_install() {
-       if ! use no-rawdb; then
-               insinto /usr/share/${PN}
-               doins ${PN}.{doc,dat,lis}
-       fi
-       dodoc *.txt
-       dohtml prosuser.htm
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               insinto /usr/share/EMBOSS/data/PROSITE
-               doins PROSITE/*
-       fi
-}

diff --git a/app-sci/prosite/prosite-18.40.ebuild b/app-sci/prosite/prosite-18.40.ebuild
deleted file mode 100644 (file)
index 8f23f06..0000000
--- a/app-sci/prosite/prosite-18.40.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.40.ebuild,v 1.2 2004/12/14 00:45:03 ribosome Exp $
-
-DESCRIPTION="A protein families and domains database"
-HOMEPAGE="http://ca.expasy.org/${PN}"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="swiss-prot"
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-src_compile() {
-       # Index the database for use with EMBOSS if EMBOSS is installed and
-       # the user did not explicitly request not to index the database.
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               mkdir PROSITE
-               einfo "Indexing PROSITE for usage with EMBOSS."
-               EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
-                       "Indexing PROSITE failed."
-       fi
-}
-
-src_install() {
-       if ! use no-rawdb; then
-               insinto /usr/share/${PN}
-               doins ${PN}.{doc,dat,lis}
-       fi
-       dodoc *.txt
-       dohtml prosuser.htm
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               insinto /usr/share/EMBOSS/data/PROSITE
-               doins PROSITE/*
-       fi
-}

diff --git a/app-sci/prosite/prosite-18.41.ebuild b/app-sci/prosite/prosite-18.41.ebuild
deleted file mode 100644 (file)
index 8bfae23..0000000
--- a/app-sci/prosite/prosite-18.41.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/prosite/prosite-18.41.ebuild,v 1.1 2004/12/14 00:45:03 ribosome Exp $
-
-DESCRIPTION="A protein families and domains database"
-HOMEPAGE="http://ca.expasy.org/${PN}"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="swiss-prot"
-SLOT="0"
-KEYWORDS="~x86 ~ppc"
-IUSE="no-emboss no-rawdb"
-
-src_compile() {
-       # Index the database for use with EMBOSS if EMBOSS is installed and
-       # the user did not explicitly request not to index the database.
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               mkdir PROSITE
-               einfo "Indexing PROSITE for usage with EMBOSS."
-               EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \
-                       "Indexing PROSITE failed."
-       fi
-}
-
-src_install() {
-       if ! use no-rawdb; then
-               insinto /usr/share/${PN}
-               doins ${PN}.{doc,dat,lis}
-       fi
-       dodoc *.txt
-       dohtml prosuser.htm
-       if [ -e /usr/bin/prosextract ] && ! use no-emboss; then
-               insinto /usr/share/EMBOSS/data/PROSITE
-               doins PROSITE/*
-       fi
-}