+++ /dev/null
-# ChangeLog for app-sci/emboss
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/ChangeLog,v 1.15 2004/11/01 01:28:06 ribosome Exp $
-
- 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild,
- -emboss-2.8.0-r3.ebuild:
- Removed old version. Added 2.9.0 to x86.
-
- 10 Aug 2004; Olivier Fisette <ribosome@gentoo.org>
- emboss-2.8.0-r3.ebuild:
- Added to x86.
- emboss-2.8.0-r2.ebuild:
- Removed obsolete ebuild.
-
- 21 Jul 2004; David Holm <dholm@gentoo.org> emboss-2.9.0.ebuild:
- Added to ~ppc.
-
- 20 Jul 2004; Olivier Fisette <ribosome@gentoo.org>
- emboss-2.8.0-r3.ebuild, emboss-2.9.0.ebuild:
- Removed icc support since no patching is needed.
-
- 19 Jul 2004; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild:
- Version bump. Changed the configuration and install steps a bit to
- reflect the fact that header files are now installed automatically.
-
- 14 Jul 2004; Olivier Fisette <ribosome@gentoo.org>
- emboss-2.8.0-r3.ebuild: Modified configuration step to make the X and png
- USE flags independent; Added support for icc; Added primer3 and clustalw
- to the dependencies since some EMBOSS programs won't work without them;
- Added support for the biological databases aaindex, cutg, prints, prosite,
- rebase and transfac, which are needed for many EMBOSS programs (the databases
- are PDEPENDencies since they all must be indexed with an EMBOSS program before
- use) (this database support is optional); Added header files installation for
- EMBOSS development.
- emboss-2.8.0-r2.ebuild: Added to x86.
- emboss-2.8.0-r1.ebuild, emboss-2.8.0.ebuild, emboss-2.7.1.ebuild: Removed files.
- metadata.xml: Added long description; Set myself as maintainer.
-
- 02 Jun 2004; Aron Griffis <agriffis@gentoo.org> emboss-2.8.0-r1.ebuild,
- emboss-2.8.0-r2.ebuild:
- Fix use invocation
-
- 12 May 2004; David Holm <dholm@gentoo.org> emboss-2.8.0-r2.ebuild:
- Added to ~ppc.
-
-*emboss-2.8.0-r2 (11 May 2004)
-
- 11 May 2004; Patrick Kursawe <phosphan@gentoo.org> emboss-2.8.0-r2.ebuild,
- files/22emboss-r1:
- Adjusted value of PLPLOT_LIB, see bug #50176
-
-*emboss-2.8.0-r1 (30 Jan 2004)
-
- 30 Jan 2004; Stephen Diener <sediener@gentoo.org> emboss-2.8.0-r1.ebuild:
- Modified to use X and png properly for servers
-
- 28 Jan 2004; Stephen Diener <sediener@gentoo.org> emboss-2.8.0.ebuild:
- Modified 2.8.0 ebuild to require X not just USE it.
-
-*emboss-2.8.0 (13 Dec 2003)
-
- 13 Dec 2003; Stephen Diener <sediener@gentoo.org> emboss-2.7.1.ebuild,
- emboss-2.8.0.ebuild:
- Version bump...
-
- 20 Oct 2003; George Shapovalov <george@gentoo.org> metdata.xml :
- added metadata.xml, marked ebuild stable
-
-*emboss-2.7.1 (03 Sep 2003)
-
- 03 Sep 2003; <sediener@gentoo.org> emboss-2.7.1.ebuild:
- Initial ebuild
-
+++ /dev/null
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/emboss-2.9.0.ebuild,v 1.7 2004/12/23 21:29:30 ribosome Exp $
-
-DESCRIPTION="The European Molecular Biology Open Software Suite: a sequence analysis package."
-HOMEPAGE="http://emboss.sourceforge.net/"
-SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
-LICENSE="GPL-2 LGPL-2"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="X png no-biodata"
-
-DEPEND="X? ( virtual/x11 )
- png? (
- sys-libs/zlib
- media-libs/libpng
- >=media-libs/gd-1.8
- )
- sci-biology/primer3
- sci-biology/clustalw"
-
-PDEPEND="!no-biodata? (
- sci-biology/aaindex
- sci-biology/cutg
- sci-biology/prints
- sci-biology/prosite
- sci-biology/rebase
- sci-biology/transfac
- )"
-
-S=${WORKDIR}/EMBOSS-${PV}
-
-src_compile() {
- EXTRA_CONF="--includedir=${D}/usr/include/emboss"
- ! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
- ! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
-
- econf ${EXTRA_CONF} || die
- # Do not install the JEMBOSS component (the --without-java configure option
- # does not work). JEMBOSS will be available as a separate package.
- sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile
- emake || die
-}
-
-src_install() {
- einstall || die
- dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
-
- # Install env file for setting libplplot and acd files path.
- insinto /etc/env.d
- newins ${FILESDIR}/22emboss-r1 22emboss
-
- # Symlink preinstalled docs to /usr/share/doc.
- dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
- dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
- dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
-}
+++ /dev/null
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer>
- <email>ribosome@gentoo.org</email>
- <name>Olivier Fisette</name>
- </maintainer>
- <herd>sci</herd>
- <longdescription>
- EMBOSS is "The European Molecular Biology Open Software Suite".
- EMBOSS is a free Open Source software analysis package specially
- developed for the needs of the molecular biology (e.g. EMBnet) user
- community. The software automatically copes with data in a variety
- of formats and even allows transparent retrieval of sequence data
- from the web. Also, as extensive libraries are provided with the
- package, it is a platform to allow other scientists to develop and
- release software in true open source spirit. EMBOSS also integrates
- a range of currently available packages and tools for sequence
- analysis into a seamless whole. EMBOSS breaks the historical trend
- towards commercial software packages.
- </longdescription>
-</pkgmetadata>
projects / gentoo.git / commitdiff