sci-chemistry/modeller: Version bump

Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
index 0674ee130c5fa32a83739bcb68fed52bfcda2596..69e1780c97f50441087663a7014fc1e94ee1ac43 100644 (file)
--- a/sci-chemistry/modeller/Manifest
+++ b/sci-chemistry/modeller/Manifest
@@ -1 +1,2 @@
 DIST modeller-9.20.tar.gz 34909796 BLAKE2B d89c81823c4d7784a7b3d64fdb01158a973edc7d8b316c773e038ba8645797c543d5bc58c1bff5462ae5975a6c2796f4b2d500641d226c3b2281cf794cfeba8d SHA512 667edeeda0a9038258f6932b3cef22a1e9d0fe47f47bd2ac612e7bac7f23a863f5a65cfd93abfa405310e7fb7b305d53e71d6c6e930613b0dbd43b24dcd5919a
+DIST modeller-9.22.tar.gz 34953371 BLAKE2B 3bf8828b38f22955dea973cfe54cbd2f77bf021900bd5aa3c75f083b12e2a7199c3173de526acfeab005c0606816bac347b9bdfb6b62d5e3db9c9e18fed99ac4 SHA512 0056f09a07d6e2b565c8f4accca48ad176c9d32634b75bc4db60a187d56f22ef1710296dfd31bf27f496c5ed100146420be7cfdb135ca8b2b0fac7d7f5fa877f

diff --git a/sci-chemistry/modeller/modeller-9.22.ebuild b/sci-chemistry/modeller/modeller-9.22.ebuild
new file mode 100644 (file)
index 0000000..57f11e1
--- /dev/null
+++ b/sci-chemistry/modeller/modeller-9.22.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1 eutils multilib
+
+DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
+HOMEPAGE="https://salilab.org/modeller/"
+SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
+
+LICENSE="modeller"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples"
+SLOT="0"
+
+RESTRICT="mirror"
+
+DEPEND=">=dev-lang/swig-1.3"
+RDEPEND=""
+
+INPATH="${EPREFIX}"/opt/modeller${ver}
+
+QA_PREBUILT="/opt/*"
+
+pkg_setup() {
+       case ${ARCH} in
+               x86)
+                       EXECTYPE="i386-intel8";;
+               amd64)
+                       EXECTYPE="x86_64-intel8";;
+               *)
+                       die "Your arch "${ARCH}" does not appear supported at this time.";;
+       esac
+}
+
+python_prepare_all(){
+       sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
+       distutils-r1_python_prepare_all
+}
+
+python_compile(){
+       cd src/swig || die
+       swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
+       distutils-r1_python_compile
+}
+
+python_install() {
+       cd src/swig || die
+       distutils-r1_python_install
+}
+
+python_install_all(){
+       cd "${S}" || die
+       sed \
+               -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
+               -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
+               -i bin/modscript || die
+
+       sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
+               -e "s;@EXETYPE\@;${EXECTYPE};" \
+               bin/modpy.sh.in > "${T}/modpy.sh"
+
+       insinto ${INPATH}
+       doins -r modlib
+       python_foreach_impl python_domodule modlib/modeller
+
+       insinto ${INPATH}/bin
+       doins -r bin/{lib,*top}
+
+       exeinto ${INPATH}/bin
+       doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
+
+       python_foreach_impl python_doscript bin/modslave.py
+       dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
+       dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
+
+       exeinto ${INPATH}/lib/${EXECTYPE}/
+       doexe lib/${EXECTYPE}/lib*
+       dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
+       dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8
+
+       use doc && HTML_DOCS=( doc/. )
+       distutils-r1_python_install_all
+
+       if use examples; then
+               insinto /usr/share/${PN}/
+               doins -r examples
+       fi
+
+       insinto /etc/revdep-rebuild
+       cat >> "${T}"/40-${PN} <<- EOF
+       SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
+       EOF
+       doins "${T}"/40-${PN}
+}
+
+pkg_postinst() {
+       if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
+               echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
+       fi
+
+       if grep -q license ${INPATH}/modlib/modeller/config.py; then
+               einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
+       else
+               ewarn "Obtain a license Key from"
+               ewarn "http://salilab.org/modeller/registration.html"
+               ewarn "And run this before using modeller:"
+               ewarn "emerge --config =${CATEGORY}/${PF}"
+               ewarn "That way you can [re]enter your license key."
+       fi
+}
+
+pkg_postrm() {
+       ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
+       ewarn "that you need to remove to completely get rid of modeller."
+}
+
+pkg_config() {
+       ewarn "Your license key is NOT checked for validity here."
+       ewarn "  Make sure you type it in correctly."
+       eerror "If you CTRL+C out of this, modeller will not run!"
+       while true
+       do
+               einfo "Please enter your license key:"
+               read license_key1
+               einfo "Please re-enter your license key:"
+               read license_key2
+               if [[ "$license_key1" == "" ]]
+               then
+                       echo "You entered a blank license key.  Try again."
+               else
+                       if [[ "$license_key1" == "$license_key2" ]]
+                       then
+                               echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
+                               einfo "Thank you!"
+                               break
+                       else
+                               eerror "Your license key entries do not match.  Try again."
+                       fi
+               fi
+       done
+}