Removing obsolete emboss packages

Package-Manager: portage-2.0.51.22-r2

diff --git a/sci-biology/embassy-construct/ChangeLog b/sci-biology/embassy-construct/ChangeLog
deleted file mode 100644 (file)
index 15c4886..0000000
--- a/sci-biology/embassy-construct/ChangeLog
+++ /dev/null
@@ -1,33 +0,0 @@
-# ChangeLog for sci-biology/embassy-construct
-# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/ChangeLog,v 1.7 2005/08/07 21:41:10 ribosome Exp $
-
-  07 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
-  embassy-construct-1.0.0.ebuild:
-  Ported to the improved embassy.eclass.
-
-  27 Jul 2005; Lina Pezzella <j4rg0n@gentoo.org>
-  embassy-construct-1.0.0.ebuild:
-  Stable ppc-macos
-
-  26 Jun 2005; Lina Pezzella <j4rg0n@gentoo.org>
-  embassy-construct-1.0.0.ebuild:
-  Keyworded ~ppc-macos
-
-  24 Jun 2005; Joseph Jezak <josejx@gentoo.org>
-  embassy-construct-1.0.0.ebuild:
-  Marked ppc stable.
-
-  13 May 2005; Olivier Fisette <ribosome@gentoo.org>
-  embassy-construct-1.0.0.ebuild:
-  Added to x86.
-
-  06 May 2005; David Holm <dholm@gentoo.org> embassy-construct-1.0.0.ebuild:
-  Added to ~ppc.
-
-*embassy-construct-1.0.0 (22 Mar 2005)
-
-  22 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +embassy-construct-1.0.0.ebuild:
-  Initial import.
-

diff --git a/sci-biology/embassy-construct/Manifest b/sci-biology/embassy-construct/Manifest
deleted file mode 100644 (file)
index 142f4a0..0000000
--- a/sci-biology/embassy-construct/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 2eaca7da149a58998c933ba26936da59 ChangeLog 1037
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
-MD5 350dc809bc66600c8d71d1a38647dde9 embassy-construct-1.0.0.ebuild 366
-MD5 9e9daba9b9de731f2ca2f60f7fc69960 files/digest-embassy-construct-1.0.0 134

diff --git a/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild b/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild
deleted file mode 100644 (file)
index d32d93b..0000000
--- a/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild
+++ /dev/null
@@ -1,11 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild,v 1.8 2005/08/07 21:41:10 ribosome Exp $
-
-EBOV="2.10.0"
-
-inherit embassy
-
-DESCRIPTION="Sequence alignment add-on package for EMBOSS"
-
-KEYWORDS="ppc ppc-macos x86"

diff --git a/sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0 b/sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0
deleted file mode 100644 (file)
index 3cd6554..0000000
--- a/sci-biology/embassy-construct/files/digest-embassy-construct-1.0.0
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 4a48388ced7021a8ffece5166c40a364 EMBOSS-2.10.0.tar.gz 16262124
-MD5 a9c491132d02ddaf7ad0ac80f0249c02 CONSTRUCT-1.0.0.tar.gz 355234

diff --git a/sci-biology/embassy-construct/metadata.xml b/sci-biology/embassy-construct/metadata.xml
deleted file mode 100644 (file)
index e9391a4..0000000
--- a/sci-biology/embassy-construct/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-       <maintainer>
-               <email>ribosome@gentoo.org</email>
-               <name>Olivier Fisette</name>
-       </maintainer>
-       <herd>sci</herd>
-</pkgmetadata>

diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 78264b88bb47cb64777af5bf1feb657b951a2ce3..aaf5b94ef8c89f7e8f596b0631177c3eb4e688ec 100644 (file)
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/emboss
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.21 2005/10/03 21:57:27 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.22 2005/10/04 00:13:13 ribosome Exp $
+
+  04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -emboss-2.10.0.ebuild:
+  Removed obsolete version.
 
   03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> emboss-3.0.0.ebuild:
   Stable on ppc-macos (with j4rg0n's permission, bug #102420).

diff --git a/sci-biology/emboss/emboss-2.10.0.ebuild b/sci-biology/emboss/emboss-2.10.0.ebuild
deleted file mode 100644 (file)
index b4af1b8..0000000
--- a/sci-biology/emboss/emboss-2.10.0.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-2.10.0.ebuild,v 1.7 2005/08/13 02:55:35 ribosome Exp $
-
-DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
-HOMEPAGE="http://emboss.sourceforge.net/"
-SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
-LICENSE="GPL-2 LGPL-2"
-
-SLOT="0"
-KEYWORDS="ppc ppc-macos ppc64 x86"
-IUSE="X png minimal"
-
-DEPEND="X? ( virtual/x11 )
-       png? (
-               sys-libs/zlib
-               media-libs/libpng
-               >=media-libs/gd-1.8
-       )
-       !minimal? (
-               sci-biology/primer3
-               sci-biology/clustalw
-       )"
-
-PDEPEND="!minimal? (
-               sci-biology/aaindex
-               sci-biology/cutg
-               sci-biology/prints
-               <=sci-biology/prosite-19.6
-               sci-biology/rebase
-               sci-biology/transfac
-       )"
-
-S=${WORKDIR}/EMBOSS-${PV}
-
-src_compile() {
-       EXTRA_CONF="--includedir=${D}/usr/include/emboss"
-       ! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
-       ! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
-
-       econf ${EXTRA_CONF} || die
-       # Do not install the JEMBOSS component (the --without-java configure option
-       # does not work). JEMBOSS will be available as a separate package.
-       sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile || die
-       emake || die
-}
-
-src_install() {
-       einstall || die
-       dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
-
-       # Install env file for setting libplplot and acd files path.
-       insinto /etc/env.d
-       newins ${FILESDIR}/22emboss-r1 22emboss
-
-       # Symlink preinstalled docs to /usr/share/doc.
-       dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
-       dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
-       dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
-}

diff --git a/sci-biology/emboss/files/digest-emboss-2.10.0 b/sci-biology/emboss/files/digest-emboss-2.10.0
deleted file mode 100644 (file)
index 7b973e3..0000000
--- a/sci-biology/emboss/files/digest-emboss-2.10.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 4a48388ced7021a8ffece5166c40a364 EMBOSS-2.10.0.tar.gz 16262124

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index 0513c49ee927c5a7a5b057f506a391b058ac7b11..338b77a5c72029d92068752d8321937a6b429b15 100644 (file)
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/prosite
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.49 2005/10/03 21:57:27 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.50 2005/10/04 00:13:13 ribosome Exp $
+
+  04 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -prosite-19.6.ebuild:
+  Removed obsolete version.
 
   03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> prosite-19.10.ebuild:
   Stable on ppc-macos (with j4rg0n's permission, bug #102420).

diff --git a/sci-biology/prosite/files/digest-prosite-19.6 b/sci-biology/prosite/files/digest-prosite-19.6
deleted file mode 100644 (file)
index 5a4d7db..0000000
--- a/sci-biology/prosite/files/digest-prosite-19.6
+++ /dev/null
@@ -1 +0,0 @@
-MD5 98e086d8e6d9d7bf0053055c336eae06 prosite-19.6.tar.bz2 3588111

diff --git a/sci-biology/prosite/prosite-19.6.ebuild b/sci-biology/prosite/prosite-19.6.ebuild
deleted file mode 100644 (file)
index 126ef70..0000000
--- a/sci-biology/prosite/prosite-19.6.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.6.ebuild,v 1.5 2005/08/29 16:00:30 j4rg0n Exp $
-
-DESCRIPTION="A protein families and domains database"
-HOMEPAGE="http://ca.expasy.org/prosite"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="swiss-prot"
-SLOT="0"
-KEYWORDS="ppc ppc-macos ppc64 x86"
-IUSE="emboss minimal"
-# Minimal build keeps only the indexed files (if applicable) and the documentation.
-# The non-indexed database is not installed.
-
-DEPEND="emboss? ( sci-biology/emboss )"
-
-src_compile() {
-       if use emboss; then
-               mkdir PROSITE
-               echo
-               einfo "Indexing PROSITE for usage with EMBOSS."
-               EMBOSS_DATA="." prosextract -auto -infdat ${S} || die \
-                       "Indexing PROSITE failed."
-               echo
-       fi
-}
-
-src_install() {
-       if ! use minimal; then
-               insinto /usr/share/${PN}
-               doins ${PN}.{doc,dat,lis} || die
-       fi
-       dodoc *.txt || die
-       dohtml *.htm || die
-       if use emboss; then
-               insinto /usr/share/EMBOSS/data/PROSITE
-               doins PROSITE/* || die
-       fi
-}