Converted figures/fit-space/fig.gp to fit-valley.asy.

But the current output PDF is big and slow :(.

diff --git a/tex/src/figures/fit-space/SConscript b/tex/src/figures/fit-space/SConscript
index 4d5ace9cc564b32fb99c275edf24e431496abf83..b1d707390407906c1a59a772bd3d3a315c48a0e5 100644 (file)
--- a/tex/src/figures/fit-space/SConscript
+++ b/tex/src/figures/fit-space/SConscript
@@ -1,7 +1,7 @@
 from site_cons.site_init import link_wtk_graph
 
 
-FIGURES = ['king_vs_best', 'fit_valley'] #, 'mean_and_stdev']
+FIGURES = ['king_vs_best', 'fit-valley'] #, 'mean_and_stdev']
 
 # Get the passed in environment.
 Import('env')

diff --git a/tex/src/figures/fit-space/fig.gp b/tex/src/figures/fit-space/fig.gp
deleted file mode 100644 (file)
index 356e025..0000000
--- a/tex/src/figures/fit-space/fig.gp
+++ /dev/null
@@ -1,23 +0,0 @@
-set terminal pdf enhanced font 'Times,7' size 9cm, 6cm
-set output 'fig.pdf'
-unset key
-set nosurface
-set style data lines
-
-#set noclabel
-#set contour base
-#set cntrparam levels discrete 0.03, 0.04, 0.05
-
-set pm3d
-set style data pm3d
-
-set view map
-set logscale x
-set xrange [0.002:0.26383]
-set yrange [0.12:0.198077]
-set xtics format "10^{%L}"
-set xlabel '{/Times-Italic k_{uo}} (s^{-1})'
-set ylabel '{/Symbol D}{/Times-Italic x_u} (nm)'
-
-#splot 'data' using 1:($2*1e9):3
-splot 'data' using 1:($2*1e9):(log10($3))

diff --git a/tex/src/figures/fit-space/fit-valley.asy b/tex/src/figures/fit-space/fit-valley.asy
new file mode 100644 (file)
index 0000000..fb5748c
--- /dev/null
+++ b/tex/src/figures/fit-space/fit-valley.asy
@@ -0,0 +1,18 @@
+import wtk_graph;
+
+size(15cm,10cm,IgnoreAspect);
+
+scale(Log, Linear);
+real xscale=1;
+real yscale=1;
+
+graphMatrixFile("data", xscale=xscale, yscale=yscale, zfn=log10);
+
+xlimits(0.002,0.26383);
+ylimits(0.12,0.198077);
+
+label(sLabel("Fit quality"), point(N),N);
+xaxis(sLabel("$k_{uo}$ (s$^-1$)"),BottomTop,LeftTicks);
+yaxis(sLabel("$x_u$ (nm)"),LeftRight,RightTicks);
+
+add(legend(),point(E),20E,UnFill);

diff --git a/tex/src/sawsim/discussion.tex b/tex/src/sawsim/discussion.tex
index 807aaf3f15ad1f35287b20eed6728ef503c9709e..b1cf55788829f6d31cf89ad5c145fe34cdb73b40 100644 (file)
--- a/tex/src/sawsim/discussion.tex
+++ b/tex/src/sawsim/discussion.tex
@@ -319,7 +319,7 @@ about the protein from other sources.
 
 \begin{figure}
   \begin{center}
-  \includegraphics{figures/fit-space/fig}
+  \includegraphics{figures/fit-space/fit-valley}
   \caption{Fit quality between an experimental data set and simulated
     data sets obtained using various values of unfolding rate
     parameters $k_{u0}$ and $\Delta x_u$.  The experimental data are