dev-perl/Bio-DB-HTS: respect LDFLAGS

Closes: https://bugs.gentoo.org/713816
Package-Manager: Portage-2.3.89, Repoman-2.3.20
Signed-off-by: Marek Szuba <marecki@gentoo.org>

diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild
index 745f39851f38f563ef519985b3e25b993ecb5bbb..76af57429d3dcad7528315037618b586abc0b2b4 100644 (file)
--- a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -24,6 +24,7 @@ DEPEND="${RDEPEND}
        test? ( dev-perl/Test-LeakTrace )"
 
 PATCHES=(
+       "${FILESDIR}/2.11-build_env_ldflags.patch"
        "${FILESDIR}/2.11-build_split_htslib_opts.patch"
 )
 

diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild
index 6b6736ef6c11af2ab186b88514868953464128ee..575961ddaf10b250066362160fd34d348c166f0b 100644 (file)
--- a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild
@@ -24,6 +24,7 @@ DEPEND="${RDEPEND}
        test? ( dev-perl/Test-LeakTrace )"
 
 PATCHES=(
+       "${FILESDIR}/2.11-build_env_ldflags.patch"
        "${FILESDIR}/2.11-build_split_htslib_opts.patch"
 )
 

diff --git a/dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch b/dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch
new file mode 100644 (file)
index 0000000..eef0779
--- /dev/null
+++ b/dev-perl/Bio-DB-HTS/files/2.11-build_env_ldflags.patch
@@ -0,0 +1,22 @@
+--- a/Build.PL
++++ b/Build.PL
+@@ -107,11 +107,17 @@
+     my $hts_include = $self->config_data('hts_include');
+     my $hts_lib     = $self->config_data('hts_lib');
+     my $static      = $self->args('static');
++
++    my @env_linker_flags;
++    if ( defined $ENV{LDFLAGS} ) {
++        @env_linker_flags = split qr{\s+}, $ENV{LDFLAGS};
++    }
++
+     $self->include_dirs([$hts_include]);
+     if($static){
+-      $self->extra_linker_flags("-L$hts_lib", '-lhts', '-lpthread', '-lz');
++      $self->extra_linker_flags(@env_linker_flags, "-L$hts_lib", '-lhts', '-lpthread', '-lz');
+     }else{
+-      $self->extra_linker_flags("-L$hts_lib", "-Wl,-rpath,$hts_lib", '-lhts', '-lpthread', '-lz');
++      $self->extra_linker_flags(@env_linker_flags, "-L$hts_lib", "-Wl,-rpath,$hts_lib", '-lhts', '-lpthread', '-lz');
+     }
+ }
+