Pull out cantilever peak index simulation figure.

diff --git a/tex/src/cantilever/simulations.tex b/tex/src/cantilever/simulations.tex
index 82f1359ab4697deed8e43a12e2f00dae78b4597c..931f1557120190d0f29bce8eda2e33df8bfbe580 100644 (file)
--- a/tex/src/cantilever/simulations.tex
+++ b/tex/src/cantilever/simulations.tex
@@ -8,39 +8,22 @@ combination with our \sawsim Monte Carlo simulator yielded the
 following results:
 
 \begin{figure}
-  \asyfig{figures/cantilever-data/v_dep}
-  \caption{Unfolding force velocity dependence for different cantilevers.}
+  \asyfig{figures/cantilever-data/v-dep}
+  \caption{Unfolding force velocity dependence for different cantilevers.\label{fig:v-dep:cant}}
 \end{figure}
 
 \begin{figure}
   \asyfig{figures/cantilever-data/loading-rate-sim}
+  \caption{Unfolding force loading rate dependence simulations for
+    different cantilevers.}
+\end{figure}
+
+\begin{figure}
+  \asyfig{figures/cantilever-data/i-dep}
+  \caption{Unfolding force peak index dependence simulations for
+    different cantilevers.}
 \end{figure}
 
-%\begin{figure}
-%\begin{asy}
-%size(6cm,4cm,IgnoreAspect);
-%scale(Linear, Linear);
-%real xscale=1;
-%real yscale=1e12;
-%
-%graphFile("cantilever/i_dep_127_8_1e-6", xscale, yscale, phard, m8, t=units("127","pN/nm")+", 8 domains");
-%graphFile("cantilever/i_dep_27_8_1e-6", xscale, yscale, pmed, m8, t=units("27","pN/nm")+", 8 domains");
-%graphFile("cantilever/i_dep_127_30_1e-6", xscale, yscale, phard, m30, t=units("127","pN/nm")+", 30 domains");
-%graphFile("cantilever/i_dep_27_30_1e-6", xscale, yscale, pmed, m30, t=units("27","pN/nm")+", 30 domains");
-%graphFile("cantilever/i_dep_0.1_1_1e-6", xscale, yscale, psoft, m1, t=units("0.1","pN/nm")+", 1 domain");
-%graphFile("cantilever/i_dep_0.1_30_1e-6", xscale, yscale, psoft, m30, t=units("0.1","pN/nm")+", 30 domains");
-%
-%//xlimits(1,10);
-%ylimits(140,320);
-%
-%label(sLabel("Peak index dependence ("+units("1.0","$\mu$m/s")+")"), point(N),N);
-%xaxis(sLabel("Peak index"),BottomTop,LeftTicks);
-%yaxis(sLabel("Unfolding force (pN)"),LeftRight,RightTicks);
-%
-%add(legend(),point(E),20E,UnFill);
-%\end{asy}
-%\end{figure}
-%
 %\begin{figure}
 %\begin{asy}
 %size(6cm,4cm,IgnoreAspect);

diff --git a/tex/src/figures/cantilever-data/Makefile b/tex/src/figures/cantilever-data/Makefile
index 186c20de56210600bfbbf62543ca5ec99e8eb816..30e11c1e85fce3fd6499940dbbcb77a6cfd976fd 100644 (file)
--- a/tex/src/figures/cantilever-data/Makefile
+++ b/tex/src/figures/cantilever-data/Makefile
@@ -6,7 +6,7 @@ ASYPROCESS = ../asy/asyprocess \
 all : loading-rate_.tex sim-loading-rate_.tex v_dep_.tex
 
 clean :
-       rm -f loading-rate{_,-}* sim-loading-rate{_,-}* v_dep{_,-}*
+       rm -f loading-rate{_,-}* sim-loading-rate{_,-}* v-dep{_,-}*
 
 %_.tex : %.asy
        $(ASYPROCESS) $(patsubst %.asy, %, $<)

diff --git a/tex/src/figures/cantilever-data/i-dep.asy b/tex/src/figures/cantilever-data/i-dep.asy
new file mode 100644 (file)
index 0000000..caaf177
--- /dev/null
+++ b/tex/src/figures/cantilever-data/i-dep.asy
@@ -0,0 +1,22 @@
+import wtk_graph;
+
+size(15cm,10cm,IgnoreAspect);
+scale(Linear, Linear);
+real xscale=1;
+real yscale=1e12;
+
+graphFile("i-dep.d/i_dep_127_8_1e-6", xscale, yscale, phard, m8, t=units("127","pN/nm")+", 8 domains");
+graphFile("i-dep.d/i_dep_27_8_1e-6", xscale, yscale, pmed, m8, t=units("27","pN/nm")+", 8 domains");
+graphFile("i-dep.d/i_dep_127_30_1e-6", xscale, yscale, phard, m30, t=units("127","pN/nm")+", 30 domains");
+graphFile("i-dep.d/i_dep_27_30_1e-6", xscale, yscale, pmed, m30, t=units("27","pN/nm")+", 30 domains");
+graphFile("i-dep.d/i_dep_0.1_1_1e-6", xscale, yscale, psoft, m1, t=units("0.1","pN/nm")+", 1 domain");
+graphFile("i-dep.d/i_dep_0.1_30_1e-6", xscale, yscale, psoft, m30, t=units("0.1","pN/nm")+", 30 domains");
+
+//xlimits(1,10);
+ylimits(140,320);
+
+label(sLabel("Peak index dependence ("+units("1.0","$\mu$m/s")+")"), point(N),N);
+xaxis(sLabel("Peak index"),BottomTop,LeftTicks);
+yaxis(sLabel("Unfolding force (pN)"),LeftRight,RightTicks);
+
+add(legend(),point(E),20E,UnFill);

diff --git a/tex/src/figures/cantilever-data/v_dep.asy b/tex/src/figures/cantilever-data/v-dep.asy
similarity index 61%
rename from tex/src/figures/cantilever-data/v_dep.asy
rename to tex/src/figures/cantilever-data/v-dep.asy
index 8f514a386234c6b551b738f750933e609a1ffc1b..056e477a47b9604dd21cec500eb601f302c91d49 100644 (file)
--- a/tex/src/figures/cantilever-data/v_dep.asy
+++ b/tex/src/figures/cantilever-data/v-dep.asy
@@ -4,12 +4,12 @@ size(15cm,10cm,IgnoreAspect);
 scale(Log, Linear);
 real xscale=1e6;
 real yscale=1e12;
-graphFile("v_dep.d/v_dep_127_8", xscale, yscale, p=phard, mpath=m8, t=units("127","pN/nm")+", 8 domains");
-graphFile("v_dep.d/v_dep_27_8", xscale, yscale, p=pmed, mpath=m8, t=units("27","pN/nm")+", 8 domains");
-graphFile("v_dep.d/v_dep_127_30", xscale, yscale, p=phard, mpath=m30, t=units("127","pN/nm")+", 30 domains");
-graphFile("v_dep.d/v_dep_27_30", xscale, yscale, p=pmed, mpath=m30, t=units("27","pN/nm")+", 30 domains");
-graphFile("v_dep.d/v_dep_0.1_1", xscale, yscale, p=psoft, mpath=m1, t=units("0.1","pN/nm")+", 1 domain");
-graphFile("v_dep.d/v_dep_0.1_30", xscale, yscale, p=psoft, mpath=m30, t=units("0.1","pN/nm")+", 30 domains");
+graphFile("v-dep.d/v_dep_127_8", xscale, yscale, p=phard, mpath=m8, t=units("127","pN/nm")+", 8 domains");
+graphFile("v-dep.d/v_dep_27_8", xscale, yscale, p=pmed, mpath=m8, t=units("27","pN/nm")+", 8 domains");
+graphFile("v-dep.d/v_dep_127_30", xscale, yscale, p=phard, mpath=m30, t=units("127","pN/nm")+", 30 domains");
+graphFile("v-dep.d/v_dep_27_30", xscale, yscale, p=pmed, mpath=m30, t=units("27","pN/nm")+", 30 domains");
+graphFile("v-dep.d/v_dep_0.1_1", xscale, yscale, p=psoft, mpath=m1, t=units("0.1","pN/nm")+", 1 domain");
+graphFile("v-dep.d/v_dep_0.1_30", xscale, yscale, p=psoft, mpath=m30, t=units("0.1","pN/nm")+", 30 domains");
 
 //xlimits(1,10);
 ylimits(150,340);

diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_1 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_1
similarity index 100%
rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_1
rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_1

diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_30 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_30
similarity index 100%
rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_0.1_30
rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_0.1_30

diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_127_30 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_127_30
similarity index 100%
rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_127_30
rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_127_30

diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_127_8 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_127_8
similarity index 100%
rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_127_8
rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_127_8

diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_27_30 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_27_30
similarity index 100%
rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_27_30
rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_27_30

diff --git a/tex/src/figures/cantilever-data/v_dep.d/v_dep_27_8 b/tex/src/figures/cantilever-data/v-dep.d/v_dep_27_8
similarity index 100%
rename from tex/src/figures/cantilever-data/v_dep.d/v_dep_27_8
rename to tex/src/figures/cantilever-data/v-dep.d/v_dep_27_8