<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
+ <maintainer>
+ <email>ribosome@gentoo.org</email>
+ <name>Olivier Fisette</name>
+ </maintainer>
<herd>sci</herd>
<longdescription>
The Vienna RNA Package consists of a C code library and several
structures. RNA secondary structure prediction through energy
minimization is the most used function in the package. We provide three
kinds of dynamic programming algorithms for structure prediction: the
- minimum free energy algorithm of (Zuker and Stiegler 1981) which yields
- a single optimal structure, the partition function algorithm of
+ minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
+ single optimal structure, the partition function algorithm of
(McCaskill 1990) which calculates base pair probabilities in the
thermodynamic ensemble, and the suboptimal folding algorithm of
(Wuchty et.al 1999) which generates all suboptimal structures within a