New upstream version

Package-Manager: portage-2.1.1-r2

diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
index d561c11cd1ae5df9313b0cee9c4b9dda59d61f5c..8e486895d875d62c2cb21b4b570acdfa31982767 100644 (file)
--- a/sci-biology/primer3/ChangeLog
+++ b/sci-biology/primer3/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/primer3
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.14 2007/01/06 20:52:19 kugelfang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.15 2007/02/02 15:19:41 ribosome Exp $
+
+*primer3-1.0.1 (02 Feb 2007)
+
+  02 Feb 2007; Olivier Fisette <ribosome@gentoo.org> +primer3-1.0.1.ebuild:
+  New upstream version.
 
   06 Jan 2007; Danny van Dyk <kugelfang@gentoo.org> -primer3-1.0b.ebuild:
   QA: Removed unused versions.

diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index 8102112cca95936bf6dafe605de07e33ef5e3781..95b114f21d28590e551765d69f4b241580289e7e 100644 (file)
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -1,15 +1,17 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 DIST primer3_1.0.0.tar.gz 936696 RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 SHA1 0227f1f26c8b45dff9033543bee4387ade173c73 SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b
+DIST primer3_1.0.1.tar.gz 902576 RMD160 aef14e5f3346c3a2c92e83620c5f1ecb4b5f7630 SHA1 ee8680e3ca38ab3675eb35ce576b6d9541ed9fd8 SHA256 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e
 EBUILD primer3-1.0.0.ebuild 854 RMD160 33c4fd85db4f6f0cb59e8a3df76115b1dd5acd1f SHA1 9f5083f05e34f4ddcd4bfddbce9ffe9273d1360e SHA256 57c0f9b5fcecc6c501e75a4bcd88d0e5b6ecaf2e562b369cbf551ce8eeb4071e
 MD5 28730bf8d276dea79cfa528cf3d9d55d primer3-1.0.0.ebuild 854
 RMD160 33c4fd85db4f6f0cb59e8a3df76115b1dd5acd1f primer3-1.0.0.ebuild 854
 SHA256 57c0f9b5fcecc6c501e75a4bcd88d0e5b6ecaf2e562b369cbf551ce8eeb4071e primer3-1.0.0.ebuild 854
-MISC ChangeLog 2337 RMD160 50241e7c316d7bfd16dcb3ac22b2691e9a389652 SHA1 fc607b344e8f78f57483fe29cbc8aab7af523870 SHA256 6e554e8ae64bb6f01f7f509a953ffc453754af61eb95447be30ed1eea204c4c1
-MD5 9e7020b0d50c98655ba1a026a4fd1ba0 ChangeLog 2337
-RMD160 50241e7c316d7bfd16dcb3ac22b2691e9a389652 ChangeLog 2337
-SHA256 6e554e8ae64bb6f01f7f509a953ffc453754af61eb95447be30ed1eea204c4c1 ChangeLog 2337
+EBUILD primer3-1.0.1.ebuild 829 RMD160 7c907f8b3aedd75f76a609979b645aa18bb7cefb SHA1 06689ba5b3271e50d81212506b73f38a24636885 SHA256 617cc87068df7dc9648faec57cb6be9e50ee446513fbf20d7516b263ae95c1eb
+MD5 da2534dbfbf68d6f5f29ea6a1c7a47f0 primer3-1.0.1.ebuild 829
+RMD160 7c907f8b3aedd75f76a609979b645aa18bb7cefb primer3-1.0.1.ebuild 829
+SHA256 617cc87068df7dc9648faec57cb6be9e50ee446513fbf20d7516b263ae95c1eb primer3-1.0.1.ebuild 829
+MISC ChangeLog 2467 RMD160 81aee2e134a3ba716dbded063a8b7566b542c595 SHA1 2bec9cec35042379e9a575e1aeb1b84174afff96 SHA256 e5467db534d9e41ee310db3133e68b77cd71b2cb87ec36488fd99b3aceb444e9
+MD5 a776d0b60840e5e50a74e71ea05a0e84 ChangeLog 2467
+RMD160 81aee2e134a3ba716dbded063a8b7566b542c595 ChangeLog 2467
+SHA256 e5467db534d9e41ee310db3133e68b77cd71b2cb87ec36488fd99b3aceb444e9 ChangeLog 2467
 MISC metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 SHA1 7c1c44b75d2cf8549959e2947509e58cd6c433ed SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca
 MD5 8cdd554f8d2dc15deccdb6c23a375bab metadata.xml 721
 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 metadata.xml 721
@@ -17,10 +19,6 @@ SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca metadata
 MD5 91d7203581da4a746de7b12d26b929a6 files/digest-primer3-1.0.0 241
 RMD160 7ddf10bb30198b32859ce793e99b9bde3d585aa0 files/digest-primer3-1.0.0 241
 SHA256 e960b016d3d9583d0c812d4758b446570867e0a023366c91f83a0a0c8711ca9e files/digest-primer3-1.0.0 241
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.4 (GNU/Linux)
-
-iD8DBQFFoAwP5mJXAu5GbtIRAtXiAJ4ikAzP5/4KvaQjx6XQvqIW+9brpwCcCCU+
-+wVtzvVzSb0qeXP9wuMvFME=
-=bT9g
------END PGP SIGNATURE-----
+MD5 9dd523bada7c69e46ef3a3425cf20fb7 files/digest-primer3-1.0.1 241
+RMD160 529fac4e385de34653a0830d05b1abf48ef6b6e9 files/digest-primer3-1.0.1 241
+SHA256 b888cfd675fa02d2622f34216bc977c914a6eb4612c90307462f6c3b79d955d7 files/digest-primer3-1.0.1 241

diff --git a/sci-biology/primer3/files/digest-primer3-1.0.1 b/sci-biology/primer3/files/digest-primer3-1.0.1
new file mode 100644 (file)
index 0000000..71b0d85
--- /dev/null
+++ b/sci-biology/primer3/files/digest-primer3-1.0.1
@@ -0,0 +1,3 @@
+MD5 4fa33b8667cec1b88f1516d175eb1bed primer3_1.0.1.tar.gz 902576
+RMD160 aef14e5f3346c3a2c92e83620c5f1ecb4b5f7630 primer3_1.0.1.tar.gz 902576
+SHA256 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e primer3_1.0.1.tar.gz 902576

diff --git a/sci-biology/primer3/primer3-1.0.1.ebuild b/sci-biology/primer3/primer3-1.0.1.ebuild
new file mode 100644 (file)
index 0000000..0cd2390
--- /dev/null
+++ b/sci-biology/primer3/primer3-1.0.1.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.0.1.ebuild,v 1.1 2007/02/02 15:19:41 ribosome Exp $
+
+DESCRIPTION="Design primers for PCR reactions."
+HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html"
+SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz"
+LICENSE="whitehead"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl"
+
+RDEPEND=""
+
+S="${WORKDIR}/${PN}_${PV}/src"
+
+src_compile() {
+       emake -e || die
+}
+
+src_test () {
+       cd ../test
+       perl primer_test.pl primer3_core || die
+}
+
+src_install () {
+       dobin primer3_core || die "Could not install program."
+       dodoc ../{how-to-cite.txt,README.${PN}_${PV}.txt,example} || \
+                       die "Could not install documentation."
+}