+++ /dev/null
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-system-zlib \
- --with-system-bzlib \
- --with-system-pcre \
- --with-system-xz \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/NEWS.rds
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
+++ /dev/null
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
-
-BCP=${PN}-20130129.bash_completion
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="http://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-3/${P}.tar.gz
- https://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
-REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
-
-CDEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- >=dev-libs/libpcre-8.35:3=
- virtual/blas:0
- || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )"
-
-DEPEND="${CDEPEND}
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )"
-
-RDEPEND="${CDEPEND}
- >=sys-libs/zlib-1.2.5.1-r2:0[minizip]
- java? ( >=virtual/jre-1.5 )"
-
-RESTRICT="minimal? ( test )"
-
-R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
- # Temporary fix for bug #419761
- if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
- append-flags -fno-ipa-cp-clone
- fi
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PN}-2.11.1-parallel.patch \
- "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch \
- "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -i \
- -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -i \
- -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
- src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -i \
- -e 's:\.\./manual/:manual/:g' \
- $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -i \
- -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -i \
- -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
- src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4 eaclocal
- eautoconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- --docdir="${EPREFIX}/usr/share/doc/${PF}" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/lib/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/lib/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${R_DIR}/lib
- R_HOME=${R_DIR}
- EOF
- doenvd 99R
- newbashcomp "${WORKDIR}"/${BCP} ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/lib/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
- docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds}
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
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