Added \equiv to the notation list.

Fixed up cantilever-data/Makefile to trigger DATA_DIRS generation.

All cantilever-data/*.sh scrips now exit on errors.

diff --git a/tex/src/figures/cantilever-data/Makefile b/tex/src/figures/cantilever-data/Makefile
index 510347fa9a14861b7bf527eacf1fd7b7a62c1fd3..f08f706b0fde4e75386449bfacfcca785200f686 100644 (file)
--- a/tex/src/figures/cantilever-data/Makefile
+++ b/tex/src/figures/cantilever-data/Makefile
@@ -25,7 +25,8 @@ clean :
 $(DATA_DIRS) :
        mkdir $@
 
-#data/raw : extract_f_v_k_data.sh $(DATA_DIRS)
+data/raw : extract_f_v_k_data.sh $(DATA_DIRS)
+       touch data/raw
 #      ./$< > $@
 
 data/spring-constants data/averaged-data : avg_data.py data/raw

diff --git a/tex/src/figures/cantilever-data/get_v_dep.sh b/tex/src/figures/cantilever-data/get_v_dep.sh
index 91e8924799710599eeb20a1e0956d43ab4df5cd9..e2153eceb87392842117076ecfdb6da1cd89df11 100755 (executable)
--- a/tex/src/figures/cantilever-data/get_v_dep.sh
+++ b/tex/src/figures/cantilever-data/get_v_dep.sh
@@ -1,5 +1,8 @@
 #!/bin/bash
 
+set -e # exit immediately on failed command
+set -o pipefail # pipes fail if any stage fails
+
 KFILE='./data/spring-constants'
 AVGFILE='./data/averaged-data'
 

diff --git a/tex/src/figures/cantilever-data/make_v_dep_plots.sh b/tex/src/figures/cantilever-data/make_v_dep_plots.sh
index 1fa8087f38bb399d7929b26aac283c602399c53a..60fa9f7f6b5e4b78af17ef49dbd74f68d50e2ce4 100755 (executable)
--- a/tex/src/figures/cantilever-data/make_v_dep_plots.sh
+++ b/tex/src/figures/cantilever-data/make_v_dep_plots.sh
@@ -1,5 +1,8 @@
 #!/bin/bash
 
+set -e # exit immediately on failed command
+set -o pipefail # pipes fail if any stage fails
+
 KFILE='./data/spring-constants'
 AVGFILE='./data/averaged-data'
 ASYFILE='./v-dep.asy'

diff --git a/tex/src/unfolding-distributions/singledomain_constantloading.tex b/tex/src/unfolding-distributions/singledomain_constantloading.tex
index 3dfa376ee60a3aadfc21e6306aa57acd39b1e303..3abb28a4039639e2cb3b3b71156988e75b87fc70 100644 (file)
--- a/tex/src/unfolding-distributions/singledomain_constantloading.tex
+++ b/tex/src/unfolding-distributions/singledomain_constantloading.tex
@@ -9,6 +9,7 @@ Make the definitions
   D &\equiv P_0 - P && \text{the number of dead (unfolded) proteins} \\
   \kappa &\equiv -\frac{1}{P} \deriv{t}{P} && \text{the unfolding rate}
 \end{align}
+\notation{$\equiv$}{Defined as (\ie equivalent to)}
 The proteins are under constant loading because
 \begin{equation}
   \deriv{t}{F} = \deriv{x}{F}\deriv{t}{x} = kv\;,