Don't version compiled binaries & remove exec permissions from source files.

diff --git a/src/client_server/Client_Server.doc b/src/client_server/Client_Server.doc
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diff --git a/src/client_server/Content.shtml b/src/client_server/Content.shtml
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diff --git a/src/client_server/Images/client.jpg b/src/client_server/Images/client.jpg
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diff --git a/src/client_server/Images/client_and_worker.jpg b/src/client_server/Images/client_and_worker.jpg
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diff --git a/src/client_server/Images/figure.jpg b/src/client_server/Images/figure.jpg
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diff --git a/src/client_server/Images/master_server.jpg b/src/client_server/Images/master_server.jpg
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diff --git a/src/client_server/Images/worker.jpg b/src/client_server/Images/worker.jpg
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diff --git a/src/client_server/index.shtml b/src/client_server/index.shtml
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diff --git a/src/client_server/list_plays b/src/client_server/list_plays
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diff --git a/src/direct_simulation_monte_carlo/analyze.c b/src/direct_simulation_monte_carlo/analyze.c
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diff --git a/src/direct_simulation_monte_carlo/dsmc_serial.c b/src/direct_simulation_monte_carlo/dsmc_serial.c
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diff --git a/src/direct_simulation_monte_carlo/dsmc_serial.h b/src/direct_simulation_monte_carlo/dsmc_serial.h
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diff --git a/src/direct_simulation_monte_carlo/ran_gauss.c b/src/direct_simulation_monte_carlo/ran_gauss.c
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diff --git a/src/direct_simulation_monte_carlo/ran_int.c b/src/direct_simulation_monte_carlo/ran_int.c
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diff --git a/src/mandelbrot/MS-codes/MS1 b/src/mandelbrot/MS-codes/MS1
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diff --git a/src/mandelbrot/MS-codes/MS2 b/src/mandelbrot/MS-codes/MS2
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diff --git a/src/mandelbrot/MS-codes_winter_2008/MS1.c b/src/mandelbrot/MS-codes_winter_2008/MS1.c
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diff --git a/src/mandelbrot/MS-codes_winter_2008/MS2.c b/src/mandelbrot/MS-codes_winter_2008/MS2.c
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diff --git a/src/mandelbrot/gen_data_sharp b/src/mandelbrot/gen_data_sharp
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diff --git a/src/mandelbrot/mandelbrot.c b/src/mandelbrot/mandelbrot.c
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diff --git a/src/monte_carlo/Metropolis_CS b/src/monte_carlo/Metropolis_CS
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diff --git a/src/monte_carlo/Metropolis_Gaussian_Integral b/src/monte_carlo/Metropolis_Gaussian_Integral
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diff --git a/src/monte_carlo/Metropolis_Gaussian_Parallel b/src/monte_carlo/Metropolis_Gaussian_Parallel
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diff --git a/src/monte_carlo/transfer/Metropolis_CS b/src/monte_carlo/transfer/Metropolis_CS
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diff --git a/src/monte_carlo/transfer/Metropolis_Gaussian_Client_Server b/src/monte_carlo/transfer/Metropolis_Gaussian_Client_Server
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diff --git a/src/monte_carlo/transfer/Metropolis_Gaussian_Integral b/src/monte_carlo/transfer/Metropolis_Gaussian_Integral
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diff --git a/src/monte_carlo/transfer/Metropolis_Gaussian_Parallel b/src/monte_carlo/transfer/Metropolis_Gaussian_Parallel
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diff --git a/src/monte_carlo/transfer/good b/src/monte_carlo/transfer/good
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diff --git a/src/protein_shapes/protein.c b/src/protein_shapes/protein.c
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diff --git a/src/remote_memory_access/rma_1 b/src/remote_memory_access/rma_1
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diff --git a/src/remote_memory_access/rma_2 b/src/remote_memory_access/rma_2
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diff --git a/src/structure_passing/structure.c b/src/structure_passing/structure.c
old mode 100755 (executable)
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diff --git a/src/tree_broadcast/.htaccess b/src/tree_broadcast/.htaccess
deleted file mode 100644 (file)
index ad0f04a..0000000
--- a/src/tree_broadcast/.htaccess
+++ /dev/null
@@ -1 +0,0 @@
-AddType text/plain .c

diff --git a/src/tree_broadcast/.make_tar b/src/tree_broadcast/.make_tar
deleted file mode 100644 (file)
index eb4d905..0000000
--- a/src/tree_broadcast/.make_tar
+++ /dev/null
@@ -1 +0,0 @@
-../

diff --git a/src/tree_broadcast_solution/my_broadcast.c b/src/tree_broadcast/my_broadcast.c
similarity index 100%
rename from src/tree_broadcast_solution/my_broadcast.c
rename to src/tree_broadcast/my_broadcast.c

diff --git a/src/tree_broadcast_solution/my_broadcast_any_node.c b/src/tree_broadcast/my_broadcast_any_node.c
similarity index 100%
rename from src/tree_broadcast_solution/my_broadcast_any_node.c
rename to src/tree_broadcast/my_broadcast_any_node.c

diff --git a/src/tree_broadcast/print_tree.c b/src/tree_broadcast/print_tree.c
deleted file mode 120000 (symlink)
index 9114ac110d1a7cf4ef78f51a0a7ffaf23707180c..0000000000000000000000000000000000000000
--- a/src/tree_broadcast/print_tree.c
+++ /dev/null
@@ -1 +0,0 @@
-../../../../content/global_operations/src/print_tree.c
\ No newline at end of file

diff --git a/src/tree_broadcast/print_tree.c b/src/tree_broadcast/print_tree.c
new file mode 100644 (file)
index 0000000000000000000000000000000000000000..b24887895f2ef8b117e38257558d2d6bb57b8a85
--- /dev/null
+++ b/src/tree_broadcast/print_tree.c
@@ -0,0 +1,78 @@
+
+       /* skeleton for a broadcast routine from node 0 */
+
+#include <stdio.h>
+#include <math.h>
+#include <stdlib.h>
+
+
+int main ( )
+{
+  int rank, size;
+  int source, count;
+  double msg;
+                                     /* scan over hypotetical virtual */
+                                     /* machine of 15 nodes           */
+  size = 15; 
+                                     /* message & source */
+  source = 0;
+  msg = 5.674389;
+  count = 1;
+                                     /* scan over processes */
+  for ( rank =0 ; rank<size ; rank++ )
+    {
+      my_broadcast( rank, size, source, &msg, count );
+    }
+}
+
+
+
+int my_broadcast( int rank, int size, double *msg, int count )
+{
+  int two_to_generation;
+  int Nto, to, from;
+  int * target;
+
+  target = (int *)malloc( (unsigned) size * sizeof(int) );
+
+  printf( " rank = %d ", rank );
+                                     /* two_to_generation reflects the */ 
+                                     /* steps in the tree broadcast    */
+  Nto = 0;
+  two_to_generation = 1;
+  while( two_to_generation < size )
+    {                                /* receive message */
+      if ( rank >= two_to_generation && 
+               rank < two_to_generation*2 )
+        {
+          from = rank - two_to_generation;
+          if ( from < size )
+           printf ( " -- from %d ", from );
+        }
+      if ( rank < two_to_generation )
+        {                            /* send message */
+          to = rank + two_to_generation;
+          if ( to < size )
+           {
+             target[Nto] = to;
+             Nto++;
+           }
+        }
+      two_to_generation = 2 * two_to_generation;
+    }
+                                     /* done for a given rank */
+  printf("\n");
+    
+  if (Nto > 0 )
+    {
+      for ( to=0 ; to<Nto ; to++ )
+       {
+           printf( " -- to %d ", target[ to ] );
+       }
+      printf("\n");
+    }
+
+  free( target );
+    
+  return 0;
+}

diff --git a/src/tree_broadcast_solution/print_tree_1.c b/src/tree_broadcast/print_tree_1.c
similarity index 100%
rename from src/tree_broadcast_solution/print_tree_1.c
rename to src/tree_broadcast/print_tree_1.c

diff --git a/src/tree_broadcast_solution/print_tree_2.c b/src/tree_broadcast/print_tree_2.c
similarity index 100%
rename from src/tree_broadcast_solution/print_tree_2.c
rename to src/tree_broadcast/print_tree_2.c

diff --git a/src/tree_broadcast_solution/print_tree.c b/src/tree_broadcast_solution/print_tree.c
deleted file mode 100644 (file)
index b248878..0000000
--- a/src/tree_broadcast_solution/print_tree.c
+++ /dev/null
@@ -1,78 +0,0 @@
-
-       /* skeleton for a broadcast routine from node 0 */
-
-#include <stdio.h>
-#include <math.h>
-#include <stdlib.h>
-
-
-int main ( )
-{
-  int rank, size;
-  int source, count;
-  double msg;
-                                     /* scan over hypotetical virtual */
-                                     /* machine of 15 nodes           */
-  size = 15; 
-                                     /* message & source */
-  source = 0;
-  msg = 5.674389;
-  count = 1;
-                                     /* scan over processes */
-  for ( rank =0 ; rank<size ; rank++ )
-    {
-      my_broadcast( rank, size, source, &msg, count );
-    }
-}
-
-
-
-int my_broadcast( int rank, int size, double *msg, int count )
-{
-  int two_to_generation;
-  int Nto, to, from;
-  int * target;
-
-  target = (int *)malloc( (unsigned) size * sizeof(int) );
-
-  printf( " rank = %d ", rank );
-                                     /* two_to_generation reflects the */ 
-                                     /* steps in the tree broadcast    */
-  Nto = 0;
-  two_to_generation = 1;
-  while( two_to_generation < size )
-    {                                /* receive message */
-      if ( rank >= two_to_generation && 
-               rank < two_to_generation*2 )
-        {
-          from = rank - two_to_generation;
-          if ( from < size )
-           printf ( " -- from %d ", from );
-        }
-      if ( rank < two_to_generation )
-        {                            /* send message */
-          to = rank + two_to_generation;
-          if ( to < size )
-           {
-             target[Nto] = to;
-             Nto++;
-           }
-        }
-      two_to_generation = 2 * two_to_generation;
-    }
-                                     /* done for a given rank */
-  printf("\n");
-    
-  if (Nto > 0 )
-    {
-      for ( to=0 ; to<Nto ; to++ )
-       {
-           printf( " -- to %d ", target[ to ] );
-       }
-      printf("\n");
-    }
-
-  free( target );
-    
-  return 0;
-}