# ChangeLog for sci-libs/hdf5
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/ChangeLog,v 1.53 2010/02/10 17:21:57 bicatali Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/ChangeLog,v 1.54 2010/05/04 18:38:13 bicatali Exp $
+
+*hdf5-1.8.4_p1 (04 May 2010)
+
+ 04 May 2010; Sébastien Fabbro <bicatali@gentoo.org>
+ -hdf5-1.6.5-r1.ebuild, -hdf5-1.6.6.ebuild, -hdf5-1.8.3-r1.ebuild,
+ files/hdf5-1.8.3-as-needed.patch, +hdf5-1.8.4_p1.ebuild:
+ Version bump. Important update mainly for netcdf4 users
10 Feb 2010; Sébastien Fabbro <bicatali@gentoo.org> hdf5-1.8.4-r1.ebuild:
Added some warnings for mpi
Hash: SHA1
AUX hdf5-1.6.6-gcc4.3.patch 355 RMD160 109811c4e4d434bfa09ea156e67623e50b0f89a5 SHA1 c0fe43c262723e117572b687d9f3c94910e4fddc SHA256 ca1a16f1df4c58410001ca4b06886f9df47b475100078c5e9208ff7a21ca22c1
-AUX hdf5-1.8.3-as-needed.patch 1909 RMD160 86c153a302d2730d94ab2c741fb71eb66de6b271 SHA1 aafc558d4a5bf58d78ff807f79a81b0f2ef8f8f3 SHA256 11d4fba2970b68666d65e31178f2a07630c0c1f46ef7b18bfa16d49de776a649
+AUX hdf5-1.8.3-as-needed.patch 1821 RMD160 a20e65447625134132cb3e8e19917eb499a463e8 SHA1 b295f26b8d39fae21201449441a8ac3c0c699048 SHA256 6f03f955186e2e2870517580bd14a637e2cf0206e7547184948653e04c464bb3
AUX hdf5-1.8.3-destdir.patch 1475 RMD160 78bc020b5b8aaef070bafd4a99a2e57f41e5e06b SHA1 7ddfa5d47759d1f7637d0c558cead7a7af63f23d SHA256 866a431b36a5998c1930af6384ff8cd11241af1f488ac5910d247b724eedd309
AUX hdf5-1.8.3-gnutools.patch 1352 RMD160 a0a51a484f1ab926f13618093c809b6582da8e7f SHA1 e4121383f2876dea4ba09356ca7d233fe6ac5b2e SHA256 0e6720e736d7103f39edcf8d3fb4a14f40bbee67363e8f167d9b594ef348f197
AUX hdf5-1.8.3-includes.patch 398 RMD160 5112dd05bebbc702f24fa22aeebc67209a4e6611 SHA1 339137d04a803e25a0cafaa4f4d167a4cbc9a7ae SHA256 cd82d8b3817d83d59054a2a32ce44aca060157095875f6e91c560ab830b32561
AUX mpd.conf 48 RMD160 289de9bb40759e3f71229cf47e4d2af83703a85f SHA1 244eee76dbf4ff269e4489d5cc7c3577c6c1fa6b SHA256 ae740cacaf2cb798921cb2092f5af98de67445e27af3f88858f3e6d2bbb127f4
DIST hdf5-1.6.2.tar.gz 3879147 RMD160 75678e8859e783dbb274cdabee3d916724c46780 SHA1 1afa977b371c01e53dd6e0bd3a0d879a3f2ae5a2 SHA256 aabc23cb2c744c25b71416e25bdca3b9ca8dadb9248f22314330a33d91c599ba
DIST hdf5-1.6.4.tar.gz 4862437 RMD160 8175af3153bb0a5a1278c01af2d3940f4fd5084f SHA1 e419e81097b8093d16d96708b764bd85db053e86 SHA256 11ab0d81575f333067ae091d39c28fbf446c8ecafdfe70cf92b3c35ceffbfc97
-DIST hdf5-1.6.5.tar.gz 4930666 RMD160 70db16a832f77aa6d0c97da517353665304b7b27 SHA1 c5b7b375c0eb23dcab0c66d39b1b06c263048546 SHA256 85b7cfc1e34db544fa93f5bf7effe189a5e1eb97f0cfa7b212adc11915a756b2
-DIST hdf5-1.6.6.tar.gz 5299558 RMD160 e7cf3f8d6aa5f34ef10cabf650ed43d644e54f1b SHA1 c8a9ec598cf0debb694a1d7034fd85bbd67f173b SHA256 432d02f2d6988999d3d18caa6680af3cef14c8a7537c98e7adbaa8f873fba2a7
DIST hdf5-1.6.7.tar.gz 5299219 RMD160 2dbbcccd32986dcd66ce804c5e90ac6c949b71f6 SHA1 9c26fe09cdad269c9a6757933f70ca164a47b8e8 SHA256 9d9a98204f8c7d82f767f27f84db2520c04f5c73a4a6348c781a0d91a296e9a2
-DIST hdf5-1.8.3.tar.gz 7175884 RMD160 7b279306b5458f39dc7343c14a7c7c88459823a3 SHA1 0bf66eb5d964472eae4b6c2bb26e669dcd188140 SHA256 2e124dfd59ca00dee693c06cf2517d14b361769e65edbc1c3940063437d0a5e3
+DIST hdf5-1.8.4-patch1.tar.gz 7180426 RMD160 69fbb9d58890abe36a19167b1511bd1073cc1935 SHA1 dd2f815d5145216fac93d0e5bf22316a2a7cc558 SHA256 8893a6e773e9140230ca638d592408a61bd1726c13784e4bdf048e8ed3591bd9
DIST hdf5-1.8.4.tar.gz 7181176 RMD160 e448e2326b55aa89ff0bd7488cd4291d6c5485ee SHA1 37877e29c49a6af3e23aa9ad798ef12b8ba1c05c SHA256 a992fce9387a17f175b3b188dc2a42f545a3057aeb141beb3fc3361c7521f465
EBUILD hdf5-1.6.2.ebuild 1837 RMD160 2c7e527ade607fd3d98222787db400bc86c28d37 SHA1 a1b5e54d886d09074665512428c7a1ea23f28437 SHA256 612db1a50d632dd5b0d1c63d557888c4e5765a0debf774552443cdb1dde3a49c
EBUILD hdf5-1.6.4.ebuild 2098 RMD160 348a6f05d7677e372688ca5ecdcdea36c90df7c9 SHA1 aaeed445389bad0630f518e0778f900af9614fb1 SHA256 469176113ea60bc95a7efa63ca24e6d53baeab71660a44eaa23088fedfd911af
-EBUILD hdf5-1.6.5-r1.ebuild 6638 RMD160 b19d0ec9f56fa0ba1423a494798ab79bccc1380d SHA1 ca0a6106c94fd1745e6852b89f4e119d7d10f461 SHA256 c59e90e1383173906eb59d78bb48a57acebc94530e596501db8f6d5ee8268226
-EBUILD hdf5-1.6.6.ebuild 7782 RMD160 2ee70cea539827f28e08f18638703d9a0a87a40e SHA1 cbe8ba966c6435269a84bc120189fb63ac559f8a SHA256 ab6325efffbf410230cf8df6391e33d925c6b0ed9f7b0fcaddf57c8d174ed8fd
EBUILD hdf5-1.6.7.ebuild 7799 RMD160 992a00257e2e94d2933d61950b1a85155ce995f3 SHA1 1d51c88dc85b13f658bbfde4676de013b23da2d5 SHA256 a3cacbfed63bd26c0f9346d3e0e424b0444ce1dc6e38e2fd4fa5a87f2c9f403b
-EBUILD hdf5-1.8.3-r1.ebuild 2435 RMD160 ee9b11586a1515abfd0d3182cf119b8f6b1a4011 SHA1 41e03d5c7ee325af7843e701930d216517845f3b SHA256 eb220cc4691c19ba0ade57d30f619013440d11c6be50194d15c8c9027481e09e
EBUILD hdf5-1.8.4-r1.ebuild 3109 RMD160 c37975d36839d34448e29248f7597183094e1acf SHA1 8b4b11069045137e1409255f4567a8114594d84e SHA256 1c24728311d46b40eee9aee22866e0afbfb9427cce67b052fcaacc8879158f0b
-MISC ChangeLog 11636 RMD160 0b86d260365bf41af1618de7ee37500a548e4351 SHA1 e025843b19835b52ed76580ac5921da8a5e54406 SHA256 ba0fc559dbb8aab95adbe2de110760c73419297f60c1cc6908e20bc42831087b
+EBUILD hdf5-1.8.4_p1.ebuild 3101 RMD160 2770fb98edcf6986af4d3ef5cd47c7f4c028d297 SHA1 c0390a6a7c814211d75b2172d5b37cc925b1d060 SHA256 da11216f31d31e2910156810dd9248960a2e0a56994557217099676c2eabafc2
+MISC ChangeLog 11907 RMD160 243794b028c313cae1e5523e1839f37734a769b4 SHA1 05bd21d1193fe44bb38a8fc0d818ac0071cbae73 SHA256 585150ded489b7130435dfea05ee258d5fc94e3e9c70885ed2eaa692fc313c1a
MISC metadata.xml 649 RMD160 08065c3c8adc0f0254c2c2d341b375b98837d6b1 SHA1 10e4f63c12adf0853081bd55dddc6b72ddf897a1 SHA256 c72b0032f2aa35ccb361af5bc256667a46ecf6ac3e6c84786c0291f286862780
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---- hdf5-1.8.3.orig/fortran/src/Makefile.am 2009-04-15 19:10:01.053733251 +0100
-+++ hdf5-1.8.3/fortran/src/Makefile.am 2009-04-15 19:12:49.874557795 +0100
+--- fortran/src/Makefile.am.orig 2009-04-15 19:10:01.053733251 +0100
++++ fortran/src/Makefile.am 2009-04-15 19:12:49.874557795 +0100
@@ -66,6 +66,8 @@
H5If.c H5Lf.c H5Of.c H5Pf.c H5Rf.c H5Sf.c H5Tf.c H5Zf.c \
$(PARALLEL_COND_SRC)
# h5fc is generated during configure.
# Remove it only when distclean.
DISTCLEANFILES=h5fc
---- hdf5-1.8.3.orig/hl/fortran/src/Makefile.am 2009-04-15 19:10:01.245748616 +0100
-+++ hdf5-1.8.3/hl/fortran/src/Makefile.am 2009-04-15 19:30:56.042226227 +0100
+--- hl/fortran/src/Makefile.am.orig 2009-04-15 19:10:01.245748616 +0100
++++ hl/fortran/src/Makefile.am 2009-04-15 19:30:56.042226227 +0100
@@ -43,6 +43,7 @@
libhdf5hl_fortran_la_SOURCES=H5LTfc.c H5IMfc.c H5IMcc.c H5TBfc.c H5LTff.f90 \
# Fortran module files can have different extensions and different names
# (e.g., different capitalizations) on different platforms. Write rules
---- hdf5-1.8.3.orig/hl/c++/src/Makefile.am 2009-04-15 19:10:01.249750013 +0100
-+++ hdf5-1.8.3/hl/c++/src/Makefile.am 2009-04-15 20:16:08.812068687 +0100
+--- hl/c++/src/Makefile.am.orig 2009-04-15 19:10:01.249750013 +0100
++++ hl/c++/src/Makefile.am 2009-04-15 20:16:08.812068687 +0100
@@ -35,6 +35,7 @@
# Source files for the library
# At the moment, only the H5PT Packet Table has a C++ API.
# Public headers
include_HEADERS=H5PacketTable.h
---- hdf5-1.8.3.orig/hl/src/Makefile.am 2009-05-13 17:03:11.000000000 +0200
-+++ hdf5-1.8.3/hl/src/Makefile.am 2009-09-10 19:22:57.489698969 +0200
+--- hl/src/Makefile.am.orig 2009-05-13 17:03:11.000000000 +0200
++++ hl/src/Makefile.am 2009-09-10 19:22:57.489698969 +0200
@@ -31,6 +31,7 @@
libhdf5_hl_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE)
+++ /dev/null
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.6.5-r1.ebuild,v 1.7 2008/06/06 15:04:44 markusle Exp $
-
-inherit fortran eutils toolchain-funcs
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://hdf.ncsa.uiuc.edu/HDF5/"
-SRC_URI="ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/current/src/${P}.tar.gz"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
-# need to update szip to get alpha, ia64, etc back in here,
-IUSE="cxx f90 fortran hlapi mpi ssl szip threads zlib static debug"
-
-DEPEND="mpi? ( virtual/mpi )
- ssl? ( dev-libs/openssl )
- szip? ( sci-libs/szip )
- zlib? ( sys-libs/zlib )
- sys-apps/coreutils
- sys-apps/which
- sys-process/time"
-
-RDEPEND="${DEPEND}
- dev-lang/perl"
-
-pkg_setup() {
- # The above gcc dep is a hack to insure at least one Fortran 90
- # compiler is installed if the user enables fortran support. Feel
- # free to improve it...
- if use fortran ; then
- if [ $(gcc-major-version) -ge 4 ] \
- && built_with_use sys-devel/gcc fortran ; then
- FORTRAN="gfortran"
- fortran_pkg_setup
- einfo "Configuring for GNU fortran..."
- elif
- test -d /opt/intel/fortran90 ; then
- FORTRAN="ifc"
- fortran_pkg_setup
- einfo "Configuring for Intel fortran..."
- elif use f90 ; then
- einfo "Relying on H5Detect to configure Fortran compiler..."
- FORTRAN=""
- else
- einfo "No F90 compiler found; please install either gcc 4 with"
- einfo "fortran support or some other Fortran 90 compiler such"
- einfo "as ifc or pgf90 (or disable fortran support)."
- die "No usable Fortran 90 compiler found."
- fi
- fi
-}
-
-src_compile() {
- local myconf="--with-pic"
-
- # --disable-static conflicts with --enable-cxx, so we have to do either
- # or here. --enable-cxx also conflicts with parallel (mpi) support.
- # fortran needs f90 support and requires static and mpi (for gfortran).
- if use static ; then
- if use cxx && ! use mpi ; then
- myconf="${myconf} --enable-cxx"
- elif use cxx && use mpi ; then
- ewarn "C++ support is not compatible with the mpi interface."
- die "Please disable either cxx or mpi."
- else
- myconf="${myconf} --disable-cxx"
- fi
- if use fortran && use mpi ; then
- ewarn "Requires Fortran 90 support in your mpi library..."
- myconf="${myconf} --enable-fortran --enable-static"
- elif use fortran && use f90 ; then
- ewarn "Relying on configure to detect Fortran 90 compiler..."
- myconf="${myconf} --enable-fortran --enable-static"
- elif
- use fortran && ! use mpi && ! use f90 ; then
- ewarn "Configure fortran will probably fail without mpi, if all"
- ewarn "you have is gfortran installed. Please enable mpi or"
- ewarn "install another Fortran compiler. Fortran support is"
- ewarn "not enabled for this build..."
- myconf="${myconf} --disable-fortran --enable-static"
- else
- myconf="${myconf} --disable-fortran --enable-static"
- fi
- else
- einfo "C++ support cannot be enabled without both enabling static"
- einfo "library support and disabling mpi. Fortran9X support needs"
- einfo "both static and mpi enabled to work with GNU fortran."
- echo
- einfo "Suggested USE flags for fortran and mpi using gfortran:"
- einfo "USE=\"fortran mpi static -cxx\""
- echo
- if use fortran || use cxx ; then
- die "Please adjust your use flags."
- else
- einfo "Disabling fortran, C++, and static library support..."
- myconf="${myconf} --disable-static --disable-fortran \
- --disable-cxx"
- fi
- fi
- use threads && myconf="${myconf} --with-pthread"
- use debug && myconf="${myconf} --enable-debug=all"
- use mpi && myconf="${myconf} --enable-parallel --enable-gpfs"
- use hlapi || myconf="${myconf} --disable-hl"
-
- # NOTE: the hdf5 configure script has its own interpretation of
- # the ARCH environment variable which conflicts with that of
- # ebuild/emerge. As a work around, we save the ARCH variable as
- # EBUILD_ARCH and restore it when we are done.
- EBUILD_ARCH=${ARCH}
- unset ARCH
-
- if use mpi ; then
- export CC="/usr/bin/mpicc"
- fi
- ./configure --prefix=/usr ${myconf} \
- $(use_enable zlib) \
- $(use_with ssl) \
- --enable-linux-lfs \
- --sysconfdir=/etc \
- --infodir=/usr/share/info \
- --libdir=/usr/$(get_libdir) \
- --mandir=/usr/share/man || die "configure failed"
-
- # restore the ARCH environment variable
- ARCH=${EBUILD_ARCH}
-
- # emake has occasional segfaults
- make || die "make failed"
-}
-
-src_test() {
- # make test is not reliable, and the mpi tests have a weird failure
- export HDF5_Make_Ignore=yes
- install -g portage -o portage -m 0600 "${FILESDIR}"/mpd.conf ${HOME}/.mpd.conf
- /usr/bin/mpd --daemon
- make check || die "make test failed"
- /usr/bin/mpdallexit
- export HDF5_Make_Ignore=no
-}
-
-src_install() {
- make \
- prefix="${D}"usr \
- mandir="${D}"usr/share/man \
- docdir="${D}"usr/share/doc/${PF} \
- libdir="${D}"usr/$(get_libdir) \
- infodir="${D}"usr/share/info \
- install || die "make install failed"
-
- dolib.so "${S}"/test/.libs/lib*so* || die "dolib.so failed"
-
- if use static ; then
- dolib.a "${S}"/tools/lib/.libs/libh5tools.a \
- "${S}"/test/.libs/libh5test.a || die "dolib.a failed"
- insinto /usr/$(get_libdir)
- doins "${S}"/tools/lib/libh5tools.la \
- "${S}"/test/libh5test.la || die "doins failed"
- fi
-
- dobin "${S}"/bin/iostats || die "dobin failed"
- dodoc README.txt MANIFEST
- dohtml doc/html/*
-
- if use mpi ; then
- mv "${D}"usr/bin/h5pcc "${D}"usr/bin/h5cc
- fi
- if use fortran ; then
- mv "${D}"usr/bin/h5pfc "${D}"usr/bin/h5fc
- fi
- # change the SHLIB default for C
- if ! use static ; then
- dosed "s/SHLIB:-no/SHLIB:-yes/g" "${D}"usr/bin/h5cc || die "dosed failed"
- fi
-}
-
-pkg_postinst() {
- echo
- einfo "Use the fortran flag for gfortran or ifc, and add the f90"
- einfo "flag to override the fortran flag if you have a different"
- einfo "f90 compiler installed (gfortran requires gcc 4.x). Note that"
- einfo "gfortran only works as mpif90 and is not detected properly by"
- einfo "configure without the mpi wrapper."
- echo
- einfo "There are currently 2 non-fatal test errors in the mpi tests,"
- einfo "however, all C++, Fortran, and other tests pass successfully."
- einfo "The only expected failure is currently in the PHDF5 section"
- einfo "under MPI functionality tests. The second section using the"
- einfo "MPIPOSIX driver should work, along with all other tests."
- echo
- einfo "Suggested USE flags for fortran and mpi support using gfortran:"
- einfo "USE=\"fortran mpi static -cxx\""
- echo
- ewarn "Note: currently untested on a virtual (parallel) filesystem."
- echo
-}
+++ /dev/null
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.6.6.ebuild,v 1.12 2009/09/23 20:11:51 patrick Exp $
-
-inherit eutils fixheadtails flag-o-matic fortran toolchain-funcs
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="http://hdf.ncsa.uiuc.edu/HDF5/"
-SRC_URI="ftp://ftp.hdfgroup.org/HDF5/current/src/${P}.tar.gz"
-
-LICENSE="NCSA-HDF"
-SLOT="0"
-KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~x86 ~sparc"
-# need to update szip to get alpha, ia64, etc back in here,
-IUSE="cxx debug fortran mpi ssl szip threads tools zlib "
-
-DEPEND="mpi? ( >=sys-cluster/mpich2-1.0.6
- net-fs/nfs-utils )
- ssl? ( dev-libs/openssl )
- szip? ( sci-libs/szip )
- zlib? ( sys-libs/zlib )
- sys-apps/coreutils
- sys-apps/which
- sys-process/time"
-
-RDEPEND="${DEPEND}
- dev-lang/perl"
-
-pkg_setup() {
- if has test ${FEATURES} && use mpi ; then
- elog ""
- elog "Parallel tests will launch 3 mpd processes on this box,"
- elog "so it may take some time on a slow machine (only a few"
- elog "minutes on a reasonably fast machine). Hit Ctl-C now"
- elog "and emerge with FEATURES=-test if you'd rather not..."
- elog ""
- epause 9
- fi
-
- # The above gcc dep is a hack to insure at least one Fortran 90
- # compiler is installed if the user enables fortran support. Feel
- # free to improve it...
- if use fortran ; then
- fortran_pkg_setup
- case "${FORTRANC}" in
- gfortran|ifc|ifort|f95|pgf90)
- export F9X="${FORTRANC}"
- ;;
- g77|f77|f2c)
- export F9X=""
- ;;
- esac
- fi
-
- # if anyone knows of a better way to do this...
- if use mpi && ! built_with_use sys-cluster/mpich2 pvfs2 ; then
- ewarn "Your MPI library needs parallel IO support for HDF5. You"
- ewarn "must re-emerge mpich2 with USE=pvfs2."
- die "requires parallel IO support"
- fi
-}
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
-
- epatch "${FILESDIR}"/${P}-gcc4.3.patch
- if use mpi; then
- # this is required for mpich2, and should be safe otherwise
- epatch "${FILESDIR}/${PN}-mpich2.patch"
- fi
-
- # fix test script stuff
- ht_fix_file "${S}"/bin/release "${S}"/tools/h5dump/testh5dump.sh.in
- sed -i -e "s:+4l:+4:g" tools/h5dump/testh5dump.sh.in || die "oops"
-
- # fix sort key
- sed -i -e "s:sort +2:sort -k 2:g" bin/ltmain.sh || die "sed failed"
-
-}
-
-src_compile() {
- local myconf
-
- # a better way to do this would also be nice, but i can't think of one
- if use cxx && ! use mpi ; then
- myconf="${myconf} --enable-cxx"
- elif use cxx && use mpi ; then
- ewarn "C++ support is not compatible with the mpi interface."
- die "Please disable either cxx or mpi."
- else
- myconf="${myconf} --disable-cxx"
- fi
-
- if use fortran && use mpi ; then
- ewarn "Requires Fortran 90 support in your mpi library..."
- myconf="${myconf} --enable-fortran --enable-parallel"
- fi
-
- use threads && myconf="${myconf} --with-pthread --enable-threadsafe"
-
- if use debug ; then
- myconf="${myconf} --enable-debug=all"
- else
- myconf="${myconf} --enable-production"
- fi
-
- # NOTE: the hdf5 configure script has its own interpretation of
- # the ARCH environment variable which conflicts with that of
- # ebuild/emerge. As a work around, we save the ARCH variable as
- # EBUILD_ARCH and restore it when we are done.
- EBUILD_ARCH="${ARCH}"
-
- unset ARCH
-
- if use mpi ; then
- EBUILD_CC="${CC}"
- # set NPROCS explicitly if needed
- export NPROCS=${NPROCS:=2}
- export CC="$(which mpicc)"
- if [[ ${FORTRANC} == gfortran ]] ; then
- export F9X="$(which mpif90)"
- fi
- if built_with_use sys-cluster/mpich2 pvfs2 ; then
- export LIBS="${LIBS} $(sh pvfs2-config --libs) -lmpich"
- else
- export LIBS="${LIBS} -lmpich"
- fi
- append-ldflags "${LIBS}"
- fi
-
- econf --prefix=/usr \
- $(use_enable zlib) \
- $(use_enable fortran) \
- $(use_enable mpi parallel) \
- $(use_with ssl) \
- --enable-linux-lfs \
- --sysconfdir=/etc \
- --infodir=/usr/share/info \
- --libdir=/usr/$(get_libdir) \
- --mandir=/usr/share/man \
- --enable-shared --with-pic \
- ${myconf} || die "configure failed"
-
- # restore the ARCH environment variable
- ARCH="${EBUILD_ARCH}"
-
- # emake has occasional segfaults
- make || die "make failed"
- use mpi && CC="${EBUILD_CC}"
-}
-
-src_test() {
- # all tests pass; a few are skipped, and MPI skips parts if it sees
- # only one process on the build host.
- export HDF5_Make_Ignore=yes
- if use mpi ; then
- EBUILD_CC="${CC}"
- export HDF5_PARAPREFIX="${S}/testpar"
- export CC="$(which mpicc)"
- export MPI_UNIVERSE="localhost 4"
- export NPROCS=3
- install -g portage -o portage -m 0600 "${FILESDIR}"/mpd.conf "${HOME}"/.mpd.conf
- mpd --daemon --listenport=4268
- mpd --daemon -h localhost -p 4268 -n
- mpd --daemon -h localhost -p 4268 -n
- elog "NPROCS = ${NPROCS}"
- elog "mpdtrace output:"
- mpdtrace
- fi
- make check || die "make test failed"
- use mpi && mpdallexit
- use mpi && CC="${EBUILD_CC}"
- export HDF5_Make_Ignore=no
-}
-
-src_install() {
- # emake install and einstall cause sandbox violations here
- make \
- prefix="${D}"usr \
- mandir="${D}"usr/share/man \
- docdir="${D}"usr/share/doc/"${PF}" \
- libdir="${D}"usr/$(get_libdir) \
- infodir="${D}usr"/share/info \
- install || die "make install failed"
-
- if use tools ; then
- dolib.a "${S}"/tools/lib/.libs/libh5tools.a \
- "${S}"/test/.libs/libh5test.a || die "dolib.a failed"
- insinto /usr/$(get_libdir)
- doins "${S}"/tools/lib/libh5tools.la \
- "${S}"/test/libh5test.la || die "doins failed"
- dolib.so "${S}"/test/.libs/libh5test.so.0.0.0 \
- "${S}"/test/.libs/libh5test.so.0 \
- "${S}"/test/.libs/libh5test.so \
- || die "dolib.so failed"
-
- exeinto /usr/bin
- newexe "${S}"/bin/iostats iostats.pl || die "newexe failed"
-
- exeinto /usr/share/"${PN}/test-tools"
- cd "${S}"/test
- doexe big bittests fillval lheap file_handle istore set_extent \
- srb_append cache flush1 srb_read cmpd_dset flush2 srb_write \
- dangle gass_append links stab dsets dtypes enum extend external \
- gass_read mount gass_write getname gheap hyperslab mtime ntypes \
- ohdr reserved stream_test testhdf5 ttsafe unlink
- cd "${S}"
- use mpi && doexe testpar/testphdf5 testpar/t_mpi
- fi
-
- dodoc README.txt
- dohtml doc/html/*
-
- if use mpi ; then
- mv "${D}"usr/bin/h5pcc "${D}"usr/bin/h5cc
- fi
- if use fortran ; then
- mv "${D}"usr/bin/h5pfc "${D}"usr/bin/h5fc
- fi
- # change the SHLIB default for C
- dosed "s/SHLIB:-no/SHLIB:-yes/g" "${D}"usr/bin/h5cc || die "dosed failed"
-}
-
-pkg_postinst() {
- echo
- elog "Use the fortran flag for gfortran or ifc, and add the f90"
- elog "flag to override the fortran flag if you have a different"
- elog "f90 compiler installed (gfortran requires gcc 4.x). Note that"
- elog "gfortran only works as mpif90 and is not detected properly by"
- elog "configure without the mpi wrapper."
- echo
- elog "There should not be any more test errors in the mpi tests,"
- elog "and all C++, Fortran, and other tests pass successfully."
- elog "Suggested USE flags for fortran and mpi support using"
- elog "gfortran: USE=\"fortran mpi -cxx\""
- echo
- ewarn "Note 1: Needs more SMP and cluster testing, as well as"
- ewarn "more testing on a virtual (parallel) filesystem."
- echo
- ewarn "Note 2: currently testing pvfs2 support (with mpi). Please"
- ewarn "report any problems in the usual way."
- elog
- ewarn "Note 3: you'll need rawio support enabled in your kernel or"
- ewarn "certain asynchronous IO operations may fail. Either enable"
- ewarn "the RAW driver (under Character Devices) or patch your kernel"
- ewarn "with the new PAIO drivers and use libposix-aio. See both:"
- ewarn "http://sourceforge.net/projects/paiol and"
- ewarn "http://www.bullopensource.org/posix for more info."
- elog
-}
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.3-r1.ebuild,v 1.5 2009/10/12 19:58:35 jer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/hdf5/hdf5-1.8.4_p1.ebuild,v 1.1 2010/05/04 18:38:13 bicatali Exp $
EAPI=2
inherit eutils autotools
+MYP=${PN}-${PV/_p/-patch}
+
DESCRIPTION="General purpose library and file format for storing scientific data"
HOMEPAGE="http://www.hdfgroup.org/HDF5/"
-SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${P}.tar.gz"
+SRC_URI="http://www.hdfgroup.org/ftp/HDF5/current/src/${MYP}.tar.gz"
LICENSE="NCSA-HDF"
SLOT="0"
-KEYWORDS="~alpha ~amd64 hppa ~ppc ~ppc64 ~sparc ~x86"
+KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86"
IUSE="cxx examples fortran mpi szip threads zlib"
-RDEPEND="mpi? ( || (
- sys-cluster/openmpi[romio]
- sys-cluster/mpich2[romio]
- >=sys-cluster/lam-mpi-7.1.4[romio] ) )
+RDEPEND="mpi? ( virtual/mpi[romio] )
szip? ( >=sci-libs/szip-2.1 )
zlib? ( sys-libs/zlib )"
>=sys-devel/libtool-2.2
sys-process/time"
+S="${WORKDIR}/${MYP}"
+
pkg_setup() {
if use mpi; then
+ if has_version 'sci-libs/hdf5[-mpi]'; then
+ ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
+ ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
+ fi
if use cxx; then
ewarn "Simultaneous mpi and cxx is not supported by ${PN}"
ewarn "Will disable cxx interface"
fi
export CC=mpicc
- use fortran && export FC=mpif90
+ if use fortran; then
+ export FC=mpif90
+ fi
+ elif has_version 'sci-libs/hdf5[mpi]'; then
+ ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
+ ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
fi
}
src_prepare() {
- epatch "${FILESDIR}"/${P}-as-needed.patch
- epatch "${FILESDIR}"/${P}-includes.patch
- epatch "${FILESDIR}"/${P}-gnutools.patch
- epatch "${FILESDIR}"/${P}-noreturn.patch
- epatch "${FILESDIR}"/${P}-destdir.patch
- epatch "${FILESDIR}"/${P}-signal.patch
+ epatch "${FILESDIR}"/${PN}-1.8.3-as-needed.patch
+ epatch "${FILESDIR}"/${PN}-1.8.3-includes.patch
+ epatch "${FILESDIR}"/${PN}-1.8.3-noreturn.patch
+ epatch "${FILESDIR}"/${PN}-1.8.4-gnutools.patch
+ epatch "${FILESDIR}"/${PN}-1.8.4-scaleoffset.patch
+ epatch "${FILESDIR}"/${PN}-1.8.4-sigbus.patch
- # gentoo examples directory
+ # respect gentoo examples directory
sed -i \
- -e 's:$(docdir)/hdf5:$(docdir):' \
+ -e 's:$(docdir)/hdf5:$(DESTDIR)/$(docdir):' \
$(find . -name Makefile.am) || die
+ sed -i \
+ -e '/docdir/d' \
+ config/commence.am || die
eautoreconf
# enable shared libs by default for h5cc config utility
sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" tools/misc/h5cc.in \
use threads && ! use fortran && ! use cxx && ! use mpi \
&& myconf="--enable-threadsafe"
- if use mpi && use cxx; then
+ if use mpi; then
myconf="${myconf} --disable-cxx"
- elif use cxx; then
- myconf="${myconf} --enable-cxx"
+ else
+ # workaround for bug 285148
+ if use cxx; then
+ myconf="${myconf} $(use_enable cxx) CXX=$(tc-getCXX)"
+ fi
+ if use fortran; then
+ myconf="${myconf} FC=$(tc-getFC)"
+ fi
fi
econf \
- --docdir=/usr/share/doc/${PF} \
--disable-sharedlib-rpath \
--enable-production \
--enable-strict-format-checks \
+ --docdir=/usr/share/doc/${PF} \
--enable-deprecated-symbols \
--enable-shared \
$(use_enable fortran) \
emake DESTDIR="${D}" install || die "emake install failed"
dodoc README.txt
if use examples; then
- emake -j1 DESTDIR="${D}" install-examples \
+ emake DESTDIR="${D}" install-examples \
|| die "emake install examples failed"
fi
}
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