Moving to sci-biology/biopython

diff --git a/app-sci/biopython/ChangeLog b/app-sci/biopython/ChangeLog
deleted file mode 100644 (file)
index a602625..0000000
--- a/app-sci/biopython/ChangeLog
+++ /dev/null
@@ -1,52 +0,0 @@
-# ChangeLog for app-sci/biopython
-# Copyright 2002-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/biopython/ChangeLog,v 1.13 2004/12/14 04:48:39 weeve Exp $
-
-  13 Dec 2004; Jason Wever <weeve@gentoo.org> biopython-1.24.ebuild:
-  Stable on sparc.
-
-*biopython-1.30 (07 Oct 2004)
-
-  07 Oct 2004; George Shapovalvo <george@gentoo.org> biopython-1.30.ebuild :
-  new version (#51833)
-  amd64 has problems with KDTree, will try to look into this more later
-
-  05 May 2004; Bryan Østergaard <kloeri@gentoo.org> biopython-1.24.ebuild:
-  Stable on alpha.
-
-  03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild:
-  Marked stable on x86
-
-*biopython-1.24 (29 Feb 2004)
-
-  29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild :
-  version bump
-
-*biopython-1.23 (30 Dec 2003)
-
-  29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.23.ebuild :
-  marked stable on x86
-
-  30 Dec 2003; George Shapovalvo <george@gentoo.org> biopython-1.23.ebuild :
-  new version, reworked to use distutils. Thanks to 
-  Peter Bienstman <Peter.Bienstman@rug.ac.be> for an update (#35727)
-
-  02 Sep 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild,
-  biopython-1.21.ebuild:
-  moved dev-python/Numeric to dev-python/numeric
-
-*biopython-1.21 (08 Aug 2003)
-
-  08 Aug 2003; George Shapovalov <george@gentoo.org> biopython-1.21.ebuild :
-  new version, added few docs (#25428)
-  thanks to Daniel Jaeggi <daniel@jaeggi.co.uk> for notification
-
-  04 Jul 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild:
-  renamed reportlab dep
-
-*biopython-1.10 (18 Feb 2003)
-
-  18 Feb 2003; George Shapovalov <george@gentoo.org> ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 :
-  initial release (#11617)
-  Biopython - python module for Computational Moelcular Biology
-  ebuild submitted by Daniel Jaeggi <daniel@jaeggi.co.uk>

diff --git a/app-sci/biopython/Manifest b/app-sci/biopython/Manifest
deleted file mode 100644 (file)
index 0ca9f87..0000000
--- a/app-sci/biopython/Manifest
+++ /dev/null
@@ -1,12 +0,0 @@
-MD5 ad5627e2c6070c72b3878731be65a4a9 ChangeLog 1902
-MD5 821788707f864dffce2a6cbd086ec19a biopython-1.10.ebuild 808
-MD5 64f5e7ece791b5004bf111d8ea6b1e66 biopython-1.21.ebuild 900
-MD5 ebd9935ad492f703e31fccbc90cc7133 biopython-1.23.ebuild 795
-MD5 49801c45bed7033965804aae19d530ea biopython-1.24.ebuild 790
-MD5 e52ec7d225835cda2c95c5317cdccfb4 metadata.xml 217
-MD5 4eac662e68aa34df443d7e4742d32dc8 biopython-1.30.ebuild 794
-MD5 8e719491da5d9664fddedbffc6af8f06 files/digest-biopython-1.10 67
-MD5 c54d7ea5347210ae92b5e01a346e2a21 files/digest-biopython-1.21 67
-MD5 3a482a8872b4342414ac1d59b7fee4ed files/digest-biopython-1.23 67
-MD5 aab085d47ad39d35d85a70db1e1aa89b files/digest-biopython-1.24 67
-MD5 a8b300aed93e9dbec0b14e657121d00e files/digest-biopython-1.30 67

diff --git a/app-sci/biopython/biopython-1.10.ebuild b/app-sci/biopython/biopython-1.10.ebuild
deleted file mode 100644 (file)
index 2546a9c..0000000
--- a/app-sci/biopython/biopython-1.10.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/biopython/biopython-1.10.ebuild,v 1.8 2004/06/24 21:53:05 agriffis Exp $
-
-IUSE=""
-
-DESCRIPTION="Biopython - python module for Computational Moelcular Biology"
-SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
-HOMEPAGE="http://www.biopython.org"
-
-DEPEND=">=dev-lang/python-2.0
-               >=dev-python/egenix-mx-base-2.0.3
-               >=dev-python/numeric-19.0
-               >=dev-python/reportlab-1.11"
-
-SLOT="0"
-LICENSE="as-is"
-KEYWORDS="x86 ~ppc ~sparc ~alpha"
-
-src_compile() {
-       python setup.py build || die
-#      python setup.py test --no-gui || die
-}
-
-src_install() {
-       python setup.py install --prefix=${D}/usr || die
-
-       dodoc MANIFEST PKG-INFO README NEWS LICENSE CONTRIB
-       dodoc Doc/*
-}

diff --git a/app-sci/biopython/biopython-1.21.ebuild b/app-sci/biopython/biopython-1.21.ebuild
deleted file mode 100644 (file)
index 4063dc8..0000000
--- a/app-sci/biopython/biopython-1.21.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/biopython/biopython-1.21.ebuild,v 1.7 2004/06/24 21:53:05 agriffis Exp $
-
-IUSE=""
-
-DESCRIPTION="Biopython - python module for Computational Moelcular Biology"
-SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
-HOMEPAGE="http://www.biopython.org"
-
-DEPEND=">=dev-lang/python-2.0
-               >=dev-python/egenix-mx-base-2.0.3
-               >=dev-python/numeric-19.0
-               >=dev-python/reportlab-1.11"
-
-SLOT="0"
-LICENSE="as-is"
-KEYWORDS="x86 ~ppc ~sparc ~alpha"
-
-src_compile() {
-       python setup.py build || die
-#      python setup.py test --no-gui || die
-}
-
-src_install() {
-       echo y | python setup.py install --prefix=${D}/usr || die
-
-       dodoc PKG-INFO README NEWS LICENSE CONTRIB
-       dodoc Doc/* Doc/install/*.txt
-       dohtml Doc/install/*.html
-       cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
-}

diff --git a/app-sci/biopython/biopython-1.23.ebuild b/app-sci/biopython/biopython-1.23.ebuild
deleted file mode 100644 (file)
index 77a7e73..0000000
--- a/app-sci/biopython/biopython-1.23.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/biopython/biopython-1.23.ebuild,v 1.3 2004/06/24 21:53:05 agriffis Exp $
-
-inherit distutils
-
-IUSE=""
-
-DESCRIPTION="Biopython - python modules for computational molecular biology"
-SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
-HOMEPAGE="http://www.biopython.org"
-
-DEPEND=">=dev-lang/python-2.0
-               >=dev-python/egenix-mx-base-2.0.3
-               >=dev-python/numeric-19.0
-               >=dev-python/reportlab-1.11"
-
-SLOT="0"
-LICENSE="as-is"
-KEYWORDS="x86 ~ppc ~sparc ~alpha"
-
-src_compile() {
-       distutils_src_compile
-}
-
-src_install() {
-       DOCS="Doc/* Doc/install/*.txt"
-       distutils_src_install
-
-       dohtml Doc/install/*.html
-       cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
-}

diff --git a/app-sci/biopython/biopython-1.24.ebuild b/app-sci/biopython/biopython-1.24.ebuild
deleted file mode 100644 (file)
index ca562d5..0000000
--- a/app-sci/biopython/biopython-1.24.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/biopython/biopython-1.24.ebuild,v 1.5 2004/12/14 04:48:39 weeve Exp $
-
-inherit distutils
-
-IUSE=""
-
-DESCRIPTION="Biopython - python modules for computational molecular biology"
-SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
-HOMEPAGE="http://www.biopython.org"
-
-DEPEND=">=dev-lang/python-2.0
-               >=dev-python/egenix-mx-base-2.0.3
-               >=dev-python/numeric-19.0
-               >=dev-python/reportlab-1.11"
-
-SLOT="0"
-LICENSE="as-is"
-KEYWORDS="x86 ~ppc sparc alpha"
-
-src_compile() {
-       distutils_src_compile
-}
-
-src_install() {
-       DOCS="Doc/* Doc/install/*.txt"
-       distutils_src_install
-
-       dohtml Doc/install/*.html
-       cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
-}

diff --git a/app-sci/biopython/biopython-1.30.ebuild b/app-sci/biopython/biopython-1.30.ebuild
deleted file mode 100644 (file)
index 66b71ac..0000000
--- a/app-sci/biopython/biopython-1.30.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/biopython/biopython-1.30.ebuild,v 1.1 2004/10/07 22:25:45 george Exp $
-
-inherit distutils
-
-IUSE=""
-
-DESCRIPTION="Biopython - python modules for computational molecular biology"
-SRC_URI="http://www.biopython.org/files/${P}.tar.gz"
-HOMEPAGE="http://www.biopython.org"
-
-DEPEND=">=dev-lang/python-2.2
-               >=dev-python/egenix-mx-base-2.0.3
-               >=dev-python/numeric-19.0
-               >=dev-python/reportlab-1.11"
-
-SLOT="0"
-LICENSE="as-is"
-KEYWORDS="~x86 ~ppc ~sparc ~alpha"
-
-src_compile() {
-       distutils_src_compile
-}
-
-src_install() {
-       DOCS="Doc/* Doc/install/*.txt"
-       distutils_src_install
-
-       dohtml Doc/install/*.html
-       cp -r Doc/examples/ ${D}/usr/share/doc/${PF}/
-}

diff --git a/app-sci/biopython/files/digest-biopython-1.10 b/app-sci/biopython/files/digest-biopython-1.10
deleted file mode 100644 (file)
index 2c9275b..0000000
--- a/app-sci/biopython/files/digest-biopython-1.10
+++ /dev/null
@@ -1 +0,0 @@
-MD5 be77d0408d72703a7f6c69c71050f3f8 biopython-1.10.tar.gz 1811239

diff --git a/app-sci/biopython/files/digest-biopython-1.21 b/app-sci/biopython/files/digest-biopython-1.21
deleted file mode 100644 (file)
index f70b759..0000000
--- a/app-sci/biopython/files/digest-biopython-1.21
+++ /dev/null
@@ -1 +0,0 @@
-MD5 8a27104790cb7fbd9cf4e94c84a27e0b biopython-1.21.tar.gz 2214464

diff --git a/app-sci/biopython/files/digest-biopython-1.23 b/app-sci/biopython/files/digest-biopython-1.23
deleted file mode 100644 (file)
index 72f729c..0000000
--- a/app-sci/biopython/files/digest-biopython-1.23
+++ /dev/null
@@ -1 +0,0 @@
-MD5 45ea628621c6b04d471f029ef5873aaf biopython-1.23.tar.gz 2241300

diff --git a/app-sci/biopython/files/digest-biopython-1.24 b/app-sci/biopython/files/digest-biopython-1.24
deleted file mode 100644 (file)
index b45428c..0000000
--- a/app-sci/biopython/files/digest-biopython-1.24
+++ /dev/null
@@ -1 +0,0 @@
-MD5 518aff1d15d01656f63b243739d6d5d3 biopython-1.24.tar.gz 3081227

diff --git a/app-sci/biopython/files/digest-biopython-1.30 b/app-sci/biopython/files/digest-biopython-1.30
deleted file mode 100644 (file)
index 53251dc..0000000
--- a/app-sci/biopython/files/digest-biopython-1.30
+++ /dev/null
@@ -1 +0,0 @@
-MD5 d8df866a40be20962b8ef52baa5376c1 biopython-1.30.tar.gz 3186467

diff --git a/app-sci/biopython/metadata.xml b/app-sci/biopython/metadata.xml
deleted file mode 100644 (file)
index ded1d29..0000000
--- a/app-sci/biopython/metadata.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>python</herd>
-<maintainer><email>george@gentoo.org</email></maintainer>
-</pkgmetadata>