Removing sci-biology/cbcanalyzer from Portage (see bug #153881)

diff --git a/sci-biology/cbcanalyzer/ChangeLog b/sci-biology/cbcanalyzer/ChangeLog
deleted file mode 100644 (file)
index 5b8e9e7..0000000
--- a/sci-biology/cbcanalyzer/ChangeLog
+++ /dev/null
@@ -1,22 +0,0 @@
-# ChangeLog for sci-biology/cbcanalyzer
-# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cbcanalyzer/ChangeLog,v 1.4 2005/07/05 09:54:40 dholm Exp $
-
-  05 Jul 2005; David Holm <dholm@gentoo.org> cbcanalyzer-1.0.2.ebuild:
-  Added to ~ppc.
-
-*cbcanalyzer-1.0.2 (04 Jul 2005)
-
-  04 Jul 2005; Andreas Pokorny <apokorny@gentoo.org> +cbcanalyzer-1.0.2.ebuild:
-  New version, with several bug fixes and minor feature additions.
-  
-  04 Jul 2005; Andreas Pokorny <apokorny@gentoo.org> cbcanalyzer-1.0.0.ebuild:
-  Changed the SRC_URI and HOMEPAGE
-
-
-*cbcanalyzer-1.0.0 (25 Apr 2005)
-
-  25 Apr 2005; Andreas Pokorny <apokorny@gentoo.org>
-  cbcanalyzer-1.0.0.ebuild, ChangeLog, metadata.xml:
-  Initial import 
-

diff --git a/sci-biology/cbcanalyzer/Manifest b/sci-biology/cbcanalyzer/Manifest
deleted file mode 100644 (file)
index 48995c7..0000000
--- a/sci-biology/cbcanalyzer/Manifest
+++ /dev/null
@@ -1,24 +0,0 @@
-DIST cbcanalyzer-1.0.0.tar.gz 1729756
-DIST cbcanalyzer-1.0.2.tar.gz 1737660
-EBUILD cbcanalyzer-1.0.0.ebuild 880 RMD160 5057d55a9230082b32c5cd0b34d3c6b8a4c8d855 SHA1 3769a0d24fbfb68247cc5cb788394c55ee800169 SHA256 d7d8e92dfb08bed8fe7d8e0213a59eb875cdca2daa06df666600caa68903206c
-MD5 b2707fec7fb6f02210820b71a7ca6bc0 cbcanalyzer-1.0.0.ebuild 880
-RMD160 5057d55a9230082b32c5cd0b34d3c6b8a4c8d855 cbcanalyzer-1.0.0.ebuild 880
-SHA256 d7d8e92dfb08bed8fe7d8e0213a59eb875cdca2daa06df666600caa68903206c cbcanalyzer-1.0.0.ebuild 880
-EBUILD cbcanalyzer-1.0.2.ebuild 882 RMD160 b3dd16626f8bb1ead7f9cbb1040fb19316b50393 SHA1 2b10d57b1baf90b535d3778bae03ea685a02187b SHA256 206da3c15e0728e664f199e37bc7f3bd665a8e265d0c36fc1476dcd81977f820
-MD5 e675e183246a2227a0f7265c1b7c7771 cbcanalyzer-1.0.2.ebuild 882
-RMD160 b3dd16626f8bb1ead7f9cbb1040fb19316b50393 cbcanalyzer-1.0.2.ebuild 882
-SHA256 206da3c15e0728e664f199e37bc7f3bd665a8e265d0c36fc1476dcd81977f820 cbcanalyzer-1.0.2.ebuild 882
-MISC ChangeLog 766 RMD160 62f30d4784b881f0b15cf93642d931baffb91f81 SHA1 a91e2c08530dd78ac7bf34fcce8ffb230f934dc8 SHA256 95905d7811c8321f0de6bfbdd8c6d981dc3ac0fd8e316e57a3360c2d99fb07bf
-MD5 ca86d7602abc53c0510c68fcfa6fe0e8 ChangeLog 766
-RMD160 62f30d4784b881f0b15cf93642d931baffb91f81 ChangeLog 766
-SHA256 95905d7811c8321f0de6bfbdd8c6d981dc3ac0fd8e316e57a3360c2d99fb07bf ChangeLog 766
-MISC metadata.xml 1525 RMD160 bfe724d402979a39e8843a9d48c9eca1d577e5fe SHA1 867024d583fe01e9dba5edef716a248103204002 SHA256 ea33690a6c0e163a489b0e168d0aebe94930897c392c750b5e906d9c551b5d83
-MD5 e720abed57e2a1a5d8ae0b7bf7151d01 metadata.xml 1525
-RMD160 bfe724d402979a39e8843a9d48c9eca1d577e5fe metadata.xml 1525
-SHA256 ea33690a6c0e163a489b0e168d0aebe94930897c392c750b5e906d9c551b5d83 metadata.xml 1525
-MD5 f69a329aa4d9ac75cae676a247c6fa52 files/digest-cbcanalyzer-1.0.0 70
-RMD160 049cd1b290701533f86f5b291ea57c52c54975e4 files/digest-cbcanalyzer-1.0.0 70
-SHA256 acd0ba8158d77b91da8e7cc99d1b9c454c77dd899689ae7f37f7fa216a00cab6 files/digest-cbcanalyzer-1.0.0 70
-MD5 42785cbb5761aa74eb0f4721aaf83aa3 files/digest-cbcanalyzer-1.0.2 70
-RMD160 65b76dfb7ed0975a1fbb150554de3de612534e9f files/digest-cbcanalyzer-1.0.2 70
-SHA256 735718722115d632028edf74425c1f85f32542056ac91b76352a917417ab4af7 files/digest-cbcanalyzer-1.0.2 70

diff --git a/sci-biology/cbcanalyzer/cbcanalyzer-1.0.0.ebuild b/sci-biology/cbcanalyzer/cbcanalyzer-1.0.0.ebuild
deleted file mode 100644 (file)
index 15f1735..0000000
--- a/sci-biology/cbcanalyzer/cbcanalyzer-1.0.0.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cbcanalyzer/cbcanalyzer-1.0.0.ebuild,v 1.2 2005/07/04 19:24:16 apokorny Exp $
-
-DESCRIPTION="Creates phylogenetic trees measuring compensatory base changes"
-HOMEPAGE="http://www.biozentrum.uni-wuerzburg.de/index.php?id=524"
-SRC_URI="http://www.biozentrum.uni-wuerzburg.de/fileadmin/user_upload/bioinformatik/${P}.tar.gz"
-LICENSE="GPL-2"
-
-KEYWORDS="~amd64 ~x86"
-SLOT="0"
-IUSE=""
-
-DEPEND=">=x11-libs/wxGTK-2.4.2
-       >=dev-libs/boost-1.32-r1"
-
-
-# cbcanalyzer works with wxGTK-2.4/wxGTK-2.5 gtk1 gtk2
-# but only the non unicode versions
-
-src_install() {
-       make install DESTDIR=${D} || die
-}
-
-pkg_postinst() {
-       einfo
-       einfo "To visualize trees you might want to install sci-biology/njplot"
-       einfo "and sci-biology/treeviewx."
-       einfo
-}
-

diff --git a/sci-biology/cbcanalyzer/cbcanalyzer-1.0.2.ebuild b/sci-biology/cbcanalyzer/cbcanalyzer-1.0.2.ebuild
deleted file mode 100644 (file)
index f0d8f29..0000000
--- a/sci-biology/cbcanalyzer/cbcanalyzer-1.0.2.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cbcanalyzer/cbcanalyzer-1.0.2.ebuild,v 1.2 2005/07/05 09:54:40 dholm Exp $
-
-DESCRIPTION="Creates phylogenetic trees measuring compensatory base changes"
-HOMEPAGE="http://www.biozentrum.uni-wuerzburg.de/index.php?id=524"
-SRC_URI="http://www.biozentrum.uni-wuerzburg.de/fileadmin/user_upload/bioinformatik/${P}.tar.gz"
-LICENSE="GPL-2"
-
-KEYWORDS="~amd64 ~ppc ~x86"
-SLOT="0"
-IUSE=""
-
-DEPEND=">=x11-libs/wxGTK-2.4.2
-       >=dev-libs/boost-1.32-r1"
-
-
-# cbcanalyzer works with wxGTK-2.4/wxGTK-2.5 gtk1 gtk2
-# but only the non unicode versions
-
-src_install() {
-       make install DESTDIR=${D} || die
-}
-
-pkg_postinst() {
-       einfo
-       einfo "To visualize trees you might want to install sci-biology/njplot"
-       einfo "and sci-biology/treeviewx."
-       einfo
-}
-

diff --git a/sci-biology/cbcanalyzer/files/digest-cbcanalyzer-1.0.0 b/sci-biology/cbcanalyzer/files/digest-cbcanalyzer-1.0.0
deleted file mode 100644 (file)
index c1fd3fa..0000000
--- a/sci-biology/cbcanalyzer/files/digest-cbcanalyzer-1.0.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 8ad9c083dd80bab335a2a4cf6b7397a9 cbcanalyzer-1.0.0.tar.gz 1729756

diff --git a/sci-biology/cbcanalyzer/files/digest-cbcanalyzer-1.0.2 b/sci-biology/cbcanalyzer/files/digest-cbcanalyzer-1.0.2
deleted file mode 100644 (file)
index 3fae98d..0000000
--- a/sci-biology/cbcanalyzer/files/digest-cbcanalyzer-1.0.2
+++ /dev/null
@@ -1 +0,0 @@
-MD5 f7ffcf588b37e5270e9df8015da9a3d6 cbcanalyzer-1.0.2.tar.gz 1737660

diff --git a/sci-biology/cbcanalyzer/metadata.xml b/sci-biology/cbcanalyzer/metadata.xml
deleted file mode 100644 (file)
index a24885e..0000000
--- a/sci-biology/cbcanalyzer/metadata.xml
+++ /dev/null
@@ -1,27 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-       <herd>sci-biology</herd>
-       <longdescription lang="en" >
-               CBCAnalyzer reads several CT-file formats (ct, RNAviz ct or Mac ct),
-               and generates a so called ``bracket-dot-bracket'' format that typically 
-               is used as input for other tools such as RNAforester, RNAmovie or 
-               MARNA. The latter one creates a multiple alignment based on primary
-               sequences and secondary structures that now can be used as input for
-               CBCDetect. CBCAnalyzer counts compensatory base changes in all against all 
-               of the aligned sequences. 
-                   The count (distance) matrix obtained by CBCDetect is used as input 
-               for CBCTree that reconstructs a phylogram by using the algorithm of BIONJ.
-       </longdescription>
-       <longdescription lang="de" >
-               CBCAnalyzer liest unterschiedliche CT-Format (ct, RNAviz ct oder Mac ct),
-               und generiert daraus ein sogenanntes ``Klammer-Punkt-Klammer'' Format, dass 
-               normalerweise als Eingabe für Programme wie RNAforester, RNAmovie oder
-               MARNA dient. Letzteres erzeugt ein multiples Aligment primaer basierend auf der 
-               Sequenz und sekundär basierend auf der Struktur, dies als Eingabe für
-               CBCDetect verwendet werden. CBCAnalyzer zählt dann kompensierende
-               Basiswechsel in allen Sequenzen. 
-                  Diese Zähl oder Distanzmatrix aus CBCDetect wird als Eingabe für CBCTree
-               verwendet, um ein Phylogram mit Hilfe des BIONJ-Algorithmus zu erzeugen.
-       </longdescription>
-</pkgmetadata>