sci-libs/openmm: removed (bug #536406)

diff --git a/sci-libs/openmm/ChangeLog b/sci-libs/openmm/ChangeLog
deleted file mode 100644 (file)
index 92d1930..0000000
--- a/sci-libs/openmm/ChangeLog
+++ /dev/null
@@ -1,74 +0,0 @@
-# ChangeLog for sci-libs/openmm
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/openmm/ChangeLog,v 1.16 2013/07/07 10:21:20 ago Exp $
-
-  07 Jul 2013; Agostino Sarubbo <ago@gentoo.org> openmm-5.0.1-r2.ebuild:
-  Stable for x86, wrt bug #472188
-
-  28 Jun 2013; Agostino Sarubbo <ago@gentoo.org> openmm-5.0.1-r2.ebuild:
-  Stable for amd64, wrt bug #472188
-
-  28 Jun 2013; Christoph Junghans <ottxor@gentoo.org> openmm-5.0.1-r2.ebuild,
-  openmm-5.1-r2.ebuild:
-  fixed install of plugins, too
-
-  28 Jun 2013; Christoph Junghans <ottxor@gentoo.org> openmm-5.0.1-r2.ebuild,
-  openmm-5.1-r2.ebuild:
-  fixed a typo
-
-*openmm-5.1-r2 (27 Jun 2013)
-*openmm-5.0.1-r2 (27 Jun 2013)
-
-  27 Jun 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-5.0.1-r2.ebuild,
-  +openmm-5.1-r2.ebuild, -openmm-5.0.1-r1.ebuild, -openmm-5.1-r1.ebuild:
-  fixed multilib install (bug #475002)
-
-*openmm-5.1-r1 (25 Jun 2013)
-*openmm-5.0.1-r1 (25 Jun 2013)
-
-  25 Jun 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-5.0.1-r1.ebuild,
-  +openmm-5.1-r1.ebuild, -openmm-5.0.1.ebuild, -openmm-5.1.ebuild, metadata.xml:
-  clean up + fix depend (bug #474720)
-
-*openmm-5.1 (22 May 2013)
-
-  22 May 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-5.1.ebuild:
-  version bump
-
-  22 May 2013; Christoph Junghans <ottxor@gentoo.org> -openmm-4.1.1-r1.ebuild,
-  -openmm-5.0.ebuild:
-  remove old
-
-  22 May 2013; Christoph Junghans <ottxor@gentoo.org> openmm-5.0.1.ebuild:
-  fix deps (bug #470706)
-
-*openmm-5.0.1 (10 Mar 2013)
-
-  10 Mar 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-5.0.1.ebuild:
-  version bump
-
-*openmm-5.0 (05 Feb 2013)
-
-  05 Feb 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-5.0.ebuild:
-  version bump
-
-*openmm-4.1.1-r1 (05 Feb 2013)
-
-  05 Feb 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-4.1.1-r1.ebuild,
-  -openmm-4.1.1.ebuild, metadata.xml:
-  clean up install locations
-
-  08 Jan 2013; Christoph Junghans <ottxor@gentoo.org> openmm-4.1.1.ebuild:
-  removed fetch restriction as license allows redistribution
-
-  04 Jan 2013; Christoph Junghans <ottxor@gentoo.org> openmm-4.1.1.ebuild:
-  fixed license (thx to ulm)
-
-  26 Dec 2012; Christoph Junghans <ottxor@gentoo.org> openmm-4.1.1.ebuild:
-  fixed cmake options
-
-*openmm-4.1.1 (30 Nov 2012)
-
-  30 Nov 2012; Christoph Junghans <ottxor@gentoo.org> +metadata.xml,
-  +openmm-4.1.1.ebuild:
-  initial commit

diff --git a/sci-libs/openmm/Manifest b/sci-libs/openmm/Manifest
deleted file mode 100644 (file)
index c5549da..0000000
--- a/sci-libs/openmm/Manifest
+++ /dev/null
@@ -1,26 +0,0 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA512
-
-DIST OpenMM5.0.1-Source.zip 15201507 SHA256 8fe0cc75ec2b7e6edd7f69d64772edb6535e97bec4c2445831716239371b4af4 SHA512 6d480f424fbf18bf150d68ae21fa71cf39399de2183ee80ac73bac41e8486764833346dd173e976f133525abf51f91f47cce4dc6343693a8d489069c2202e316 WHIRLPOOL a3ece2015de51e5296de2c79267aa0527a79b124a1f4998f0093ef06ef848b098791209429b647fd27f137cc7f8e5ba97bdd86dfcaeea540ff0c274bee5be318
-DIST OpenMM5.1-Source.zip 15582536 SHA256 5f011bfbc51f48635384a05ab0e6adeb8a8d0db96a9714a792534547db30bf45 SHA512 90ecfc42d9b4a494cb160f414695cbff200203170353babf9e9bed3d3895a6fda86524e9dac83c6afec0abb440342d3077719c83c2f8bc0866931d0a8b08b0e5 WHIRLPOOL dca8173e460df7351b35712b35dd1b7151f215a9d06de68f0fc27d6cabace2488e32975dbcb03fd54ad0675a6cbc9f162e6a9d383b91598754db5a5cf9973dc6
-EBUILD openmm-5.0.1-r2.ebuild 1898 SHA256 6d778e21130e4a5a892ee33197994651103caf5e5e022c44cb014c9156568e62 SHA512 db915ceaeef85ffc39c1909d41f617cde621576e4db6dc62eb5f8422982cfaccadd8ab5c8dffc1a6680cbf0ec8febe4a981b3a0ed7d7faf517a920942703efb4 WHIRLPOOL 4f4e7bcd676a4483953bbe60e464de0de474baecdfa271bf99214da01382e10ae9bedf374e612b8bebb856ffc27137764dd04622a2e05e051f691843565c0e9a
-EBUILD openmm-5.1-r2.ebuild 1901 SHA256 665acf17b9bebeaef3c8be14561cffa93ccfe07aa8cbb24c2cca034adeb8af82 SHA512 164c5decf99922eac03ae9930942d354adf6fc29a7be68070f0c0193f1b877ebd73711ea43138e5f40f17101edb78b2e3d177f496e4f711c5acb2c6823ec8cc3 WHIRLPOOL 5a549b3c19cbcad320f08919cac4ae106f4f93afe44d1f4a2a4582b5ac534df90bd8f13b5f3cff7080dbd0e96db50f05212db38aa3064c5a79d6709621bd2db1
-MISC ChangeLog 2414 SHA256 fe2787e19d052846b0f043a365b508e20cc8aa74ab74cf8f7be7c5a6cd4a430a SHA512 d4745946da785c4f2731022a55b7aaed00bd1159257f9fef460252a79acca7d84ba639e17284fa0d42b5d359199f8d50cc7f892d698af3822cde95c5a6b4b831 WHIRLPOOL 4270c3ec687b40470fef31db6618ddce8a034a04d1bb871a825bee1e664644d5571f62ccf0695847f22a858adf2a7f9680522e279658174ecbeb1affdd762cef
-MISC metadata.xml 452 SHA256 902f554cc4cc8394837f3e55cdbfd295d5750bc21f579ed8a96ce9096c89b086 SHA512 a0d896ae48ff7d3e0b32278aa986010410d958a977628200a3aa13643f8429d2e8e13b1a3245578c90411fc1b68ce0e693a9fc4d45b81d94e3e8fbf8d0f2728a WHIRLPOOL b184a0cb2376de47d60e98622480019a09255c000fa3b77b40513e03f53a2274c42ebee5911ffcefd1e5526c248479607b1a992505f8296b0e8fcd512d4d1cfb
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diff --git a/sci-libs/openmm/metadata.xml b/sci-libs/openmm/metadata.xml
deleted file mode 100644 (file)
index ed59fda..0000000
--- a/sci-libs/openmm/metadata.xml
+++ /dev/null
@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-       <herd>sci-chemistry</herd>
-       <maintainer>
-               <email>ottxor@gentoo.org</email>
-               <name>Christoph Junghans</name>
-       </maintainer>
-       <use>
-               <flag name="cuda">enable cuda back-end</flag>
-               <flag name="opencl">enable opencl back-end</flag>
-               <flag name="wrappers">build wrappers for Python, C and Fortran</flag>
-       </use>
-</pkgmetadata>

diff --git a/sci-libs/openmm/openmm-5.0.1-r2.ebuild b/sci-libs/openmm/openmm-5.0.1-r2.ebuild
deleted file mode 100644 (file)
index 5b8d993..0000000
--- a/sci-libs/openmm/openmm-5.0.1-r2.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/openmm/openmm-5.0.1-r2.ebuild,v 1.5 2013/07/07 10:21:20 ago Exp $
-
-EAPI="5"
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-inherit cmake-utils cuda multilib python-any-r1
-
-MY_P="${PN^^[om]}${PV}-Source"
-DESCRIPTION="provides tools for modern molecular modeling simulation"
-HOMEPAGE="https://simtk.org/home/openmm"
-SRC_URI="mirror://gentoo/${MY_P}.zip"
-
-LICENSE="MIT LGPL-2.1+ BSD RU-BSD"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="cuda doc examples opencl wrappers"
-
-RDEPEND="
-       cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-       opencl? ( virtual/opencl )"
-DEPEND="${RDEPEND}
-       doc? ( app-doc/doxygen )
-       wrappers? (
-               dev-cpp/gccxml
-               virtual/jre
-               ${PYTHON_DEPS}
-               app-doc/doxygen )" # wrappers need doxygen #470706
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       use cuda && cuda_src_prepare
-
-       #475002
-       find . -name CMakeLists.txt -exec sed -i \
-               -e "/INSTALL/s@\(DESTINATION\|RUNTIME\)\(.*\)lib@\1\2$(get_libdir)@" \
-               -e "/INSTALL_TARGETS/s@lib\(.*RUNTIME\)@$(get_libdir)\1@" \
-               {} + || die
-
-       default
-}
-
-src_configure() {
-       mycmakeargs=(
-               $(cmake-utils_use cuda OPENMM_BUILD_CUDA_LIB)
-               $(cmake-utils_use opencl OPENMM_BUILD_OPENCL_LIB)
-               $(cmake-utils_use doc OPENMM_GENERATE_API_DOCS)
-               $(cmake-utils_use wrappers OPENMM_BUILD_C_AND_FORTRAN_WRAPPERS)
-               $(cmake-utils_use wrappers OPENMM_BUILD_PYTHON_WRAPPERS)
-       )
-
-       cmake-utils_src_configure
-}
-
-src_install() {
-       cmake-utils_src_install
-
-       if use doc; then
-               dodoc "${ED}"/usr/docs/*.pdf
-               dohtml -r "${ED}"/usr/docs/*.html "${ED}"/usr/docs/api-*
-       fi
-       rm -f "${ED}"/usr/docs/*.pdf
-       rm -rf "${ED}"/usr/docs/*.html "${ED}"/usr/docs/api-*
-       rmdir "${ED}"/usr/docs || die
-
-       if use examples; then
-               insinto /usr/share/"${PN}"
-               doins -r "${ED}"/usr/examples
-       fi
-       rm -rf "${ED}"/usr/examples
-
-       rm -rf "${ED}"/usr/licenses
-}

diff --git a/sci-libs/openmm/openmm-5.1-r2.ebuild b/sci-libs/openmm/openmm-5.1-r2.ebuild
deleted file mode 100644 (file)
index 0eff57d..0000000
--- a/sci-libs/openmm/openmm-5.1-r2.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/openmm/openmm-5.1-r2.ebuild,v 1.3 2013/06/28 01:30:51 ottxor Exp $
-
-EAPI="5"
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-inherit cmake-utils cuda multilib python-any-r1
-
-MY_P="${PN^^[om]}${PV}-Source"
-DESCRIPTION="provides tools for modern molecular modeling simulation"
-HOMEPAGE="https://simtk.org/home/openmm"
-SRC_URI="mirror://gentoo/${MY_P}.zip"
-
-LICENSE="MIT LGPL-2.1+ BSD RU-BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="cuda doc examples opencl wrappers"
-
-RDEPEND="
-       cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
-       opencl? ( virtual/opencl )"
-DEPEND="${RDEPEND}
-       doc? ( app-doc/doxygen )
-       wrappers? (
-               dev-cpp/gccxml
-               virtual/jre
-               ${PYTHON_DEPS}
-               app-doc/doxygen )" # wrappers need doxygen #470706
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-       use cuda && cuda_src_prepare
-
-       #475002
-       find . -name CMakeLists.txt -exec sed -i \
-               -e "/INSTALL/s@\(DESTINATION\|RUNTIME\)\(.*\)lib@\1\2$(get_libdir)@" \
-               -e "/INSTALL_TARGETS/s@lib\(.*RUNTIME\)@$(get_libdir)\1@" \
-               {} + || die
-
-       default
-}
-
-src_configure() {
-       mycmakeargs=(
-               $(cmake-utils_use cuda OPENMM_BUILD_CUDA_LIB)
-               $(cmake-utils_use opencl OPENMM_BUILD_OPENCL_LIB)
-               $(cmake-utils_use doc OPENMM_GENERATE_API_DOCS)
-               $(cmake-utils_use wrappers OPENMM_BUILD_C_AND_FORTRAN_WRAPPERS)
-               $(cmake-utils_use wrappers OPENMM_BUILD_PYTHON_WRAPPERS)
-       )
-
-       cmake-utils_src_configure
-}
-
-src_install() {
-       cmake-utils_src_install
-
-       if use doc; then
-               dodoc "${ED}"/usr/docs/*.pdf
-               dohtml -r "${ED}"/usr/docs/*.html "${ED}"/usr/docs/api-*
-       fi
-       rm -f "${ED}"/usr/docs/*.pdf
-       rm -rf "${ED}"/usr/docs/*.html "${ED}"/usr/docs/api-*
-       rmdir "${ED}"/usr/docs || die
-
-       if use examples; then
-               insinto /usr/share/"${PN}"
-               doins -r "${ED}"/usr/examples
-       fi
-       rm -rf "${ED}"/usr/examples
-
-       rm -rf "${ED}"/usr/licenses
-}