Fix link problems due to fatal warnings, #534096 & #538782

Package-Manager: portage-2.2.15/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-libs/vtk/ChangeLog b/sci-libs/vtk/ChangeLog
index 49ff78cc3dd06e338469f2c681d0f98d8ad753fa..a2a626141c0811f81daa53f399be7f6306a33bff 100644 (file)
--- a/sci-libs/vtk/ChangeLog
+++ b/sci-libs/vtk/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-libs/vtk
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/ChangeLog,v 1.124 2015/01/06 09:45:16 aballier Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/ChangeLog,v 1.125 2015/02/09 07:55:31 jlec Exp $
+
+  09 Feb 2015; Justin Lecher <jlec@gentoo.org> +files/vtk-6.1.0-memset.patch,
+  vtk-6.1.0-r1.ebuild:
+  Fix link problems due to fatal warnings, #534096 & #538782
 
   06 Jan 2015; Alexis Ballier <aballier@gentoo.org> vtk-6.1.0-r1.ebuild:
   keyword ~arm

diff --git a/sci-libs/vtk/Manifest b/sci-libs/vtk/Manifest
index 9e40011169babf5a236254d07d0be63ef0d898e3..20825f58fa89bd0c028224d0a4b8eed82588e07d 100644 (file)
--- a/sci-libs/vtk/Manifest
+++ b/sci-libs/vtk/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX vtk-5.10.1-ffmpeg-1.patch 1626 SHA256 312402db11bbc47d1596a5c58ee127af6a5807dda2331df402ebcfe7e999ea7c SHA512 34a59c7229a9dbd63d2c346906536fc1d53965489ecb148b57fd2b4b71e7b428d3bd162aa008cc92d72c006720217bf9c72863f761b7cd9b7e2241be8c52f327 WHIRLPOOL 5319732317a82df89d37914f831bf516e66ff58cd5a4a7d2ae777d732590af6ec5f8dd9d90a59ac8f46c1e228483081ade46e0ee02c2bb6ce713fbfc4ce3c669
 AUX vtk-5.10.1-libav-9.patch 3474 SHA256 688b58df16c0fada2ef5ccca8c53a8029bd6b3a6eaaddec3a210ac880cba2120 SHA512 f22d8c215aa23b9e719598b034657a61092d326dd7e2ef0e7e68a1ff0d33e1a6523e0ae85fbc2a1e72c869a295b257563daef0842f67b27716ab2652d03bb447 WHIRLPOOL 2a0cf463926b4e06df02942a0f63aeb0a659da6f1ba85a456485691199de48d418ce2c222f39a3b69876961491bf3bcacb8b1272793e3f7785771cd474e8cb75
@@ -28,6 +28,7 @@ AUX vtk-6.0.0-vtkpython.patch 583 SHA256 93280898c89da7f99962fe5536006ae52bf4881
 AUX vtk-6.1.0-freetype.patch 1159 SHA256 ab95039cf8f39d1dcdf97a3ae62c4aa47f6daad4defdb5be842719102036c452 SHA512 c4e0328d1c7c1a1842de0f70ec93fe28e5537d9add29d4e76243f91138b97e993d5ef02a80fece8cc3476086772bb2f3e97ff6c8ce18a4ffedced90ad98199e0 WHIRLPOOL 95b7d29a790aa095b2ded9becb8cb02f9ca837ab4c18cae62a5f7f8191fd94af6c5e4df5359b4ea1268d01e72fe6f8eff56ec7cef8b2ef823021f8e5395fc911
 AUX vtk-6.1.0-glext.patch 609 SHA256 17370b853306658f8421a5c7d6a5435c35a90c2c3bf60e9bf39981b774b92b9d SHA512 a2cfb0801742fded8984dfe849d3c2da9796c6c87a2bbe2eac622f4b91abe1c142fd97d94bbe248ff222fae85a80db8d6ee100de1022049ef6c9a82aaebbb9d5 WHIRLPOOL 08048efbbf745672ae22e20b1ad696f48092ab124b9837acc259ceb53a47b8f45891680affa00d0a99b5175918d1a06874bbbd03d113b663e235d75a513b2405
 AUX vtk-6.1.0-install.patch 968 SHA256 8cf7f1e8bf1c6e93da44a0a1ff4ba49405ef5e166e65eece329eab412a9e01db SHA512 e6f7e5436c6efca920bd7f9b724c219b7a34a357f01fb813bf168aefc1727b9c2d4af6cb380b4b6b70e4b091557f866761499a53e7e1c07a665d06aacd2acdb6 WHIRLPOOL 2ec857828e055eb4ff1228ce56b5c080a104f7d18e30b3aa37447af5a027c82c52a0f3a4d45c479ea2b01c4e5b11ce49820c7a53d3198db3025f171d8b945a4e
+AUX vtk-6.1.0-memset.patch 5216 SHA256 b6a4f135e37bafec0d4b03bb1f94f4de5d81fb476bc6038119898e3c08c85847 SHA512 8789198bcb9c23af290c6b2b90d7277e546fe34e8aed03d1644d1edbec1c523801f3cc325dbb3bc8606ed6e3c84ea2a45fe1f05208366a0a3260e9b73cd96691 WHIRLPOOL 809cda857680004913e3537262a85c8f4818ec79ff6815451f97aec10d5150af159f945cfb66a347a0127680aacb3b753c9a9f9332f62b6cd39d0f5c2f5dc8c0
 AUX vtk-6.1.0-netcdf.patch 994 SHA256 88b432be80b24ea223d4b5eae262dd4f9522f5db7a675ccbaa6c918595e1b738 SHA512 0f0b3493270efbf33a13abb7f38637473d48d15efe793f7148c13f5aeb77ac5534340d42f87451cd81ed2d7cce4ca6da9a71e065a7780e84f30a710d7368b488 WHIRLPOOL 2b56f6444c14326b330e90daa9e788f959d3f937e8055b09136bbd1ca7d17403073c159c018f3b76122b1cd96b671460f449bc4edfb55c588386398e3a3e5140
 AUX vtk-6.1.0-system.patch 1307 SHA256 ae8db7e796054546d9169cb9b5fc91b84cc3f13bee6e9e3cb79796165dbc9579 SHA512 1fae8aecaf2344b5517e9b29ea2cb8b834af8a22be88535ec8bf9ec624625ea3f2ca820945a3d3f7c896ca080a7ded59ca7a601c50f970e59c3a8db691f060b3 WHIRLPOOL 4b3c28c15e6cd998092078d6f36a39e32b9177f6072482c07b99c3d6c9fd6ca1f767a13f59c5a93d05cef73f5f4159eb068edbb0e9b20ff43e83970a9bc67506
 AUX vtk-6.1.0-web.patch 776 SHA256 e69d4d2d90d556279d241fd9b5c04d6f35e4b40de8e83ce7fb65e4ddb8276886 SHA512 5489096a0a4e5854cd426a75a0713f53a5c0daab7a9069c249b65d4a34cc8ff18737267f16ee8fbb2a07b7e987525b93e1eec5a23f78ac1b3f893c5847761bc5 WHIRLPOOL 9873b27097b812e932cde1633d2618ccfdf25171db983f7cb40e62376aa71bd2f1b2a84da58331f3662da88c2c738fb76759662d81cffc6b00d08a4a62f32622
@@ -38,14 +39,26 @@ DIST vtk-6.0.0.tar.gz 24170173 SHA256 426df543cffeacf21154dddcd2a6efbd91a586570a
 DIST vtkDocHtml-6.0.0.tar.gz 204228463 SHA256 f5324c4c197b0cacd19bf1e5721bb012d753d49526e224d9f2dd7412f34e4434 SHA512 b6d5660f3ae6046c63b22b613cab6822f45f6b30a09522277e32f941c75dc48e8c92abc4d7f02b17e3f4d8e625de6dce7f000acc79e2d588a13d1577c139291a WHIRLPOOL b951c4ee62639c6bada2e02c2fceddbdb730c76d80c61a6ed013d8d9878b78a697158f41f53d68b5d62e4baa1f9ecb88e2437490da7610970622a40ecb14db1f
 DIST vtkDocHtml-6.1.0.tar.gz 230827905 SHA256 e35d0f5b7905e5c827d8daa71ee61b14dc080445efad91f97583a2b9303c1813 SHA512 fcae74a65157d87b39a162facdecbb0ab0a9b95b9f2555ed2b15d635b82034bfc62181eea441caf0b1edbe036b792a8231d409908b943398ce7f662c149d3a60 WHIRLPOOL bc1714223259953a605612c0da124ece60604989458b7de5cf24b37d0f4c339f50c07a13d899f218364e61a35f8e1ace126eda5e83acbc3fe4930b041df0f55d
 EBUILD vtk-6.0.0.ebuild 8961 SHA256 7fd0e2107abe4b83da9f3cab76ad71cc61ac31ae5c7a9ef705639c27bea85fd4 SHA512 08923e5be371a48561e16937b3b095f76a2515bd3003dca0575fa3d1e84121f12795fb72c50b4772d9e4ff005e3555d7fa6b6c6538e303e474762cf47d818ff2 WHIRLPOOL ce26d21fde342ca455a07d83d7b96ca5078794d658874cb4fa9f3ac7eb7194aa5b2ff57b8a1353955a5d91712b8777d4d425dd1427e118db418e0f23fa9c3f2f
-EBUILD vtk-6.1.0-r1.ebuild 10450 SHA256 7438b05af2141d612b52d9b59b028467ec7d92b0ec2f853ebc3725bdef70b4d7 SHA512 09c627cf209efff2a5dff569dddab1a4061ad550dffedb8de021ae25fa7186fa87d88ee2aabab7dfcbb5c0424c01cc72d8a0a60f4669decf7d5501ba078b9708 WHIRLPOOL aff9cfe4d2caf547288faed1974b84daaf97b357a948e1a8931a93e31ed4beda724c8a46971f3b7bce51a7d70c77778ae81501e8c4a410a3d7156fd8174c2819
+EBUILD vtk-6.1.0-r1.ebuild 10479 SHA256 8f89accc04fb1e2ea181ff5b71b60fae8ff801735a4c72cc97214151078f0dc1 SHA512 3a77125d7d3e5bcc4404d7d50a7066a5eeb7f0f15e110c17722d521e9d4400e3ccf70d81dc9dcf88464b554392ff30b43c7dd753140bd7e026f0c248f1aa9909 WHIRLPOOL 342d542df2ffd2c623e1c2ebc4695603316cf4af66ffe1291d8e095271aeec338f1a4b74f7e5b413cd94a0a71bcb4a2efee7dd638567c4a92606d1c9966f9c64
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diff --git a/sci-libs/vtk/files/vtk-6.1.0-memset.patch b/sci-libs/vtk/files/vtk-6.1.0-memset.patch
new file mode 100644 (file)
index 0000000..362022e
--- /dev/null
+++ b/sci-libs/vtk/files/vtk-6.1.0-memset.patch
@@ -0,0 +1,147 @@
+From ef22d3d69421581b33bc0cd94b647da73b61ba96 Mon Sep 17 00:00:00 2001
+From: Anton Gladky <gladk@debian.org>
+Date: Fri, 30 May 2014 23:16:26 +0200
+Subject: [PATCH] Fix compilation by gcc-4.9
+
+VTK fails to build during compilation by gcc-4.9 with the
+following message:
+
+CMakeFiles/vtkFiltersParallelMPI.dir/vtkDistributedDataFilter.cxx.o: In
+function `memset':
+/usr/include/x86_64-linux-gnu/bits/string3.h:81: warning: memset used
+with constant zero length parameter; this could be due to transposed
+parameters
+collect2: error: ld returned 1 exit status
+
+This patch sets if-condition before all "memsets" in
+vtkDistributedDataFilter and checkes, whether the number
+of bytes to be set by memset is more than 0 to escape this
+error.
+---
+ Filters/ParallelMPI/vtkDistributedDataFilter.cxx | 48 ++++++++++++++++++------
+ 1 file changed, 37 insertions(+), 11 deletions(-)
+
+diff --git a/Filters/ParallelMPI/vtkDistributedDataFilter.cxx b/Filters/ParallelMPI/vtkDistributedDataFilter.cxx
+index 3c1ff30..df4b5d3 100644
+--- a/Filters/ParallelMPI/vtkDistributedDataFilter.cxx
++++ b/Filters/ParallelMPI/vtkDistributedDataFilter.cxx
+@@ -1091,7 +1091,10 @@ vtkDataSet *vtkDistributedDataFilter::TestFixTooFewInputFiles(vtkDataSet *input)
+   vtkIdType cellsPerNode = numTotalCells / nprocs;
+ 
+   vtkIdList **sendCells = new vtkIdList * [ nprocs ];
+-  memset(sendCells, 0, sizeof(vtkIdList *) * nprocs);
++  
++  if (sizeof(vtkIdList *) * nprocs > 0) {
++    memset(sendCells, 0, sizeof(vtkIdList *) * nprocs);
++  }
+ 
+   if (numConsumers == nprocs - 1)
+     {
+@@ -1582,7 +1585,9 @@ vtkFloatArray **
+   // Exchange int arrays
+ 
+   float **recvArrays = new float * [nprocs];
+-  memset(recvArrays, 0, sizeof(float *) * nprocs);
++  if (sizeof(float *) * nprocs > 0) {
++    memset(recvArrays, 0, sizeof(float *) * nprocs);
++  }
+ 
+   if (sendSize[me] > 0)  // sent myself an array
+     {
+@@ -1703,7 +1708,9 @@ vtkIdTypeArray **
+   // Exchange int arrays
+ 
+   vtkIdType **recvArrays = new vtkIdType * [nprocs];
+-  memset(recvArrays, 0, sizeof(vtkIdType *) * nprocs);
++  if (sizeof(vtkIdType *) * nprocs > 0) {
++    memset(recvArrays, 0, sizeof(vtkIdType *) * nprocs);
++  }
+ 
+   if (sendSize[me] > 0)  // sent myself an array
+     {
+@@ -2807,7 +2814,9 @@ void vtkDistributedDataFilter::AddConstantUnsignedCharPointArray(
+ 
+   unsigned char *vals = new unsigned char [npoints];
+ 
+-  memset(vals, val, npoints);
++  if (npoints > 0) {
++    memset(vals, val, npoints);
++  }
+ 
+   vtkUnsignedCharArray *Array = vtkUnsignedCharArray::New();
+   Array->SetName(arrayName);
+@@ -2827,7 +2836,9 @@ void vtkDistributedDataFilter::AddConstantUnsignedCharCellArray(
+ 
+   unsigned char *vals = new unsigned char [ncells];
+ 
+-  memset(vals, val, ncells);
++  if (ncells > 0) {
++    memset(vals, val, ncells);
++  }
+ 
+   vtkUnsignedCharArray *Array = vtkUnsignedCharArray::New();
+   Array->SetName(arrayName);
+@@ -3026,7 +3037,9 @@ int vtkDistributedDataFilter::AssignGlobalNodeIds(vtkUnstructuredGrid *grid)
+   vtkIdType nGridPoints = grid->GetNumberOfPoints();
+ 
+   vtkIdType *numPointsOutside = new vtkIdType [nprocs];
+-  memset(numPointsOutside, 0, sizeof(vtkIdType) * nprocs);
++  if (sizeof(vtkIdType) * nprocs > 0) {
++    memset(numPointsOutside, 0, sizeof(vtkIdType) * nprocs);
++  }
+ 
+   vtkIdTypeArray *globalIds = vtkIdTypeArray::New();
+   globalIds->SetNumberOfValues(nGridPoints);
+@@ -3108,10 +3121,16 @@ int vtkDistributedDataFilter::AssignGlobalNodeIds(vtkUnstructuredGrid *grid)
+   // global ID back?
+ 
+   vtkFloatArray **ptarrayOut = new vtkFloatArray * [nprocs];
+-  memset(ptarrayOut, 0, sizeof(vtkFloatArray *) * nprocs);
++  
++  if (sizeof(vtkFloatArray *) * nprocs > 0) {
++    memset(ptarrayOut, 0, sizeof(vtkFloatArray *) * nprocs);
++  }
+ 
+   vtkIdTypeArray **localIds     = new vtkIdTypeArray * [nprocs];
+-  memset(localIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++  
++  if (sizeof(vtkIdTypeArray *) * nprocs > 0) {
++    memset(localIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++  }
+ 
+   vtkIdType *next = new vtkIdType [nprocs];
+   vtkIdType *next3 = new vtkIdType [nprocs];
+@@ -3286,7 +3305,9 @@ vtkIdTypeArray **vtkDistributedDataFilter::FindGlobalPointIds(
+     {
+     // There are no cells in my assigned region
+ 
+-    memset(gids, 0, sizeof(vtkIdTypeArray *) * nprocs);
++    if (sizeof(vtkIdTypeArray *) * nprocs > 0) {
++      memset(gids, 0, sizeof(vtkIdTypeArray *) * nprocs);
++    }
+ 
+     return gids;
+     }
+@@ -3491,7 +3512,10 @@ vtkIdTypeArray **vtkDistributedDataFilter::MakeProcessLists(
+   std::multimap<int, int>::iterator mapIt;
+ 
+   vtkIdTypeArray **processList = new vtkIdTypeArray * [nprocs];
+-  memset(processList, 0, sizeof (vtkIdTypeArray *) * nprocs);
++
++  if (sizeof (vtkIdTypeArray *) * nprocs > 0) {
++    memset(processList, 0, sizeof (vtkIdTypeArray *) * nprocs);
++  }
+ 
+   for (int i=0; i<nprocs; i++)
+     {
+@@ -3581,7 +3605,9 @@ vtkIdTypeArray **vtkDistributedDataFilter::GetGhostPointIds(
+   vtkIdType numPoints = grid->GetNumberOfPoints();
+ 
+   vtkIdTypeArray **ghostPtIds = new vtkIdTypeArray * [nprocs];
+-  memset(ghostPtIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++  if (sizeof(vtkIdTypeArray *) * nprocs) {
++    memset(ghostPtIds, 0, sizeof(vtkIdTypeArray *) * nprocs);
++  }
+ 
+   if (numPoints < 1)
+     {

diff --git a/sci-libs/vtk/vtk-6.1.0-r1.ebuild b/sci-libs/vtk/vtk-6.1.0-r1.ebuild
index eb31d769b97ba51281910f78cd479ae53ad06fe7..3c10f7d385a3f7ecb8655d0ef3e91b3593e71395 100644 (file)
--- a/sci-libs/vtk/vtk-6.1.0-r1.ebuild
+++ b/sci-libs/vtk/vtk-6.1.0-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/vtk-6.1.0-r1.ebuild,v 1.2 2015/01/06 09:45:16 aballier Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/vtk/vtk-6.1.0-r1.ebuild,v 1.3 2015/02/09 07:55:31 jlec Exp $
 
 EAPI=5
 
@@ -123,6 +123,7 @@ PATCHES=(
        "${FILESDIR}"/${P}-netcdf.patch
        "${FILESDIR}"/${P}-web.patch
        "${FILESDIR}"/${P}-glext.patch
+       "${FILESDIR}"/${P}-memset.patch
        )
 
 RESTRICT=test