Moving to sci-biology/generic-genome-browser

diff --git a/app-sci/generic-genome-browser/ChangeLog b/app-sci/generic-genome-browser/ChangeLog
deleted file mode 100644 (file)
index b29853d..0000000
--- a/app-sci/generic-genome-browser/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for app-sci/generic-genome-browser
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/generic-genome-browser/ChangeLog,v 1.3 2004/08/03 11:47:17 dholm Exp $
-
-  03 Aug 2004; David Holm <dholm@gentoo.org>
-  generic-genome-browser-1.58.ebuild:
-  Added to ~ppc.
-
-*generic-genome-browser-1.58 (13 Jan 2004)
-
-  13 Jan 2004; Stephen Diener <sediener@gentoo.org>
-  generic-genome-browser-1.58.ebuild:
-  Initial import
-

diff --git a/app-sci/generic-genome-browser/Manifest b/app-sci/generic-genome-browser/Manifest
deleted file mode 100644 (file)
index 9b09cd4..0000000
--- a/app-sci/generic-genome-browser/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 f8a929c7cd915f81c54fe8902eb31fb0 generic-genome-browser-1.58.ebuild 2045
-MD5 9a5801972704c2ae01eec3d579429ac4 ChangeLog 485
-MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
-MD5 a46a3f4a12816bb198f2f532a605ba11 files/digest-generic-genome-browser-1.58 80

diff --git a/app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58 b/app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58
deleted file mode 100644 (file)
index 7226614..0000000
--- a/app-sci/generic-genome-browser/files/digest-generic-genome-browser-1.58
+++ /dev/null
@@ -1 +0,0 @@
-MD5 582a53ef6906eea02ecdd7fa3065928e Generic-Genome-Browser-1.58.tar.gz 1207583

diff --git a/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild b/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild
deleted file mode 100644 (file)
index 62711f9..0000000
--- a/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild
+++ /dev/null
@@ -1,82 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.5 2004/12/23 22:22:06 ribosome Exp $
-
-inherit perl-module
-
-CATEGORY="app-sci"
-
-MY_PN="Generic-Genome-Browser"
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages"
-HOMEPAGE="http://www.gmod.org"
-SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~x86 ~ppc"
-IUSE="mysql gd"
-
-S="${WORKDIR}/${MY_P}"
-
-DEPEND="
-       >=sci-biology/bioperl-1.4
-       >=dev-perl/CGI-2.56
-       >=dev-perl/GD-2.07
-       dev-perl/DBI
-       dev-perl/Digest-MD5
-       dev-perl/Text-Shellwords
-       dev-perl/libwww-perl
-       dev-perl/XML-Parser
-       dev-perl/XML-Writer
-       dev-perl/XML-Twig
-       dev-perl/XML-DOM
-       dev-perl/Bio-Das
-       gd? (
-                       dev-perl/GD-SVG
-               )
-       mysql?
-               (
-                       >=dev-db/mysql-4
-                       dev-perl/DBD-mysql
-               )
-       >=net-www/apache-2.0.47"
-
-RDEPEND="${DEPEND}"
-
-
-src_compile() {
-
-       cd ${S}
-#      ewarn "Modifying Makefile.PL to avoid sandbox violation"
-       sed -e "s:WriteMakefile(:WriteMakefile(\n 'PREFIX'=>'${D}/usr',\n'INSTALLDIRS'  => 'vendor',:" -i Makefile.PL
-
-       perl Makefile.PL \
-                       HTDOCS=/var/www/localhost/htdocs \
-                       CGIBIN=/var/www/localhost/cgi-bin \
-                       CONF=/etc \
-                       PREFIX=/var/www/localhost \
-                       DESTDIR=${D} \
-                       INSTALLDIRS=vendor
-       #perl-module_src_compile || die "Make failed"
-       perl-module_src_test || die "Test Failed"
-}
-
-src_install() {
-       dodir /etc
-       dodir /var/www/localhost/htdocs
-       dodir /var/www/localhost/cgi-bin
-       mydoc="History README TODO INSTALL"
-       dodir /usr/share/${PF}/tutorial
-       cd ${S}/docs/tutorial
-       tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
-       cd ${S}
-       sed -e "s:my \$dir = \":my \$dir = \"${D}/:" -i install_util/conf_install.PLS
-       sed -e "s:my \$ht_target = \":my \$ht_target = \"${D}/:" -i install_util/htdocs_install.PLS
-       sed -e "s:my \$cgi_target = :my \$cgi_target = \"${D}\"\.:" -i install_util/cgi_install.PLS
-
-       perl-module_src_install
-}
-
-

diff --git a/app-sci/generic-genome-browser/metadata.xml b/app-sci/generic-genome-browser/metadata.xml
deleted file mode 100644 (file)
index 8a4bcd4..0000000
--- a/app-sci/generic-genome-browser/metadata.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer><email>sediener@gentoo.org</email></maintainer>
-</pkgmetadata>