New Ebuild requested per bug 309737

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

diff --git a/sci-chemistry/pymol-plugins-ezviz/ChangeLog b/sci-chemistry/pymol-plugins-ezviz/ChangeLog
new file mode 100644 (file)
index 0000000..8f4cb05
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-ezviz/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/pymol-plugins-ezviz
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-ezviz/ChangeLog,v 1.1 2010/03/27 08:49:17 jlec Exp $
+
+*pymol-plugins-ezviz-1.0.2005 (27 Mar 2010)
+
+  27 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+  +pymol-plugins-ezviz-1.0.2005.ebuild, +files/gentoo.patch, +metadata.xml:
+  New Ebuild requested per 309737
+

diff --git a/sci-chemistry/pymol-plugins-ezviz/Manifest b/sci-chemistry/pymol-plugins-ezviz/Manifest
new file mode 100644 (file)
index 0000000..5f1d3b3
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-ezviz/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX gentoo.patch 4616 RMD160 d74f901b5e6b7844b92d93d93ce1ad4ee3950536 SHA1 8a96fabf2fb8b15c24b27bcba4382a10b769657c SHA256 3e96d68e75f3f6d75bc824daab2d025e58c6184809eb307d802bfbdb53341494
+DIST pymol-plugins-ezviz-1.0.2005.zip 137431 RMD160 1f36f033d5020acccc6b4f7612a934b004fe95f9 SHA1 7ac2ee87a6d25c5a5b8b55b8e88c2cf624a6c54a SHA256 742c18d338ccc0567203c122a5f7ce0f903bf3247f7620337828d9dd5ae4f008
+EBUILD pymol-plugins-ezviz-1.0.2005.ebuild 1372 RMD160 2dd7fcbf1742972e3e2903ff8e4302927fc8c953 SHA1 2fefa31555bd8d35e5b7b4fb51fcaf728bdf312b SHA256 643bb009d4d7cfaba9a05fa8ee8db5209ac2f977476d445d889214b2d4a2c40f
+MISC ChangeLog 447 RMD160 f3abcddf29c6187756262a71994f6244e58a7d8d SHA1 646b397be16bf78c13efe89141081470864bf693 SHA256 7343f2099f25e2440cda010871861eec0f19f1efbe4ca071c335276a6535f2d7
+MISC metadata.xml 734 RMD160 eab17443806462e202717773dfc67e69cd542e6e SHA1 f27a731f0f4915847c3cf13d43fd850f01816332 SHA256 6119764c7548a12529bd04d76aa119c4cefa59d61ec4954ae6e895a564f257ae
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.14 (GNU/Linux)
+
+iEYEARECAAYFAkutxpQACgkQgAnW8HDreRYlvQCfTz6Zz6omI1MW7+3B9viAy8Yi
+KZ8AoJmbUuMFuQ8vLUpHFS+5RZuxnm2k
+=ojpN
+-----END PGP SIGNATURE-----

diff --git a/sci-chemistry/pymol-plugins-ezviz/files/gentoo.patch b/sci-chemistry/pymol-plugins-ezviz/files/gentoo.patch
new file mode 100644 (file)
index 0000000..ba28af3
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-ezviz/files/gentoo.patch
@@ -0,0 +1,85 @@
+diff --git a/ez-viz.py b/ez-viz.py
+index 1d8e847..8d50e6b 100755
+--- a/ez-viz.py
++++ b/ez-viz.py
+@@ -363,27 +363,27 @@ class PGUI:
+     global splash
+     
+     # Images used in Presets tab
+-    defaultImage = PhotoImage( file="modules\pmg_tk\startup\default.gif")
+-    chains = PhotoImage(file="modules\pmg_tk\startup\chains.GIF")
+-    heteroImg = PhotoImage(file="modules\pmg_tk\startup\heteroAtom.GIF")
+-    ballStickImg = PhotoImage(file="C:\Program Files\DeLano Scientific\PyMOL\modules\pmg_tk\startup\showBallStick.GIF")
+-    surfaceImg = PhotoImage(file="modules\pmg_tk\startup\surface.GIF")
+-    polarityImg = PhotoImage(file="modules\pmg_tk\startup\polarity.GIF")
+-    puttyImg = PhotoImage(file="modules\pmg_tk\startup\putty.GIF")
+-    aromaticsImg = PhotoImage(file="modules\pmg_tk\startup\showAromatics.GIF")
+-    dnaImg = PhotoImage(file="modules\pmg_tk\startup\dna.GIF")
++    defaultImage = PhotoImage( file="GENTOOPYMOL/pmg_tk/startup/ez-viz/default.gif")
++    chains = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/chains.gif")
++    heteroImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/heteroAtom.gif")
++    ballStickImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/showBallStick.gif")
++    surfaceImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/surface.gif")
++    polarityImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/polarity.gif")
++    puttyImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/putty.gif")
++    aromaticsImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/showAromatics.gif")
++    dnaImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/dna.gif")
+     
+     # Movie tab images
+-    ligand = PhotoImage(file="modules\pmg_tk\startup\zoom.GIF")
+-    build = PhotoImage(file="modules\pmg_tk\startup\prot.GIF")
+-    chainsMovieImg = PhotoImage(file="modules\pmg_tk\startup\chainsMovie.GIF")
+-    rotateImg = PhotoImage(file="modules\pmg_tk\startup\Rotate.GIF")
+-    playButton = PhotoImage(file="modules\pmg_tk\startup\play.GIF")
+-    stopButton = PhotoImage(file="modules\pmg_tk\startup\stop.GIF")
+-    rewindButton = PhotoImage(file="modules\pmg_tk\startup\Rewind.GIF")
++    ligand = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/zoom.gif")
++    build = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/prot.gif")
++    chainsMovieImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/chainsMovie.gif")
++    rotateImg = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/Rotate.gif")
++    playButton = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/play.gif")
++    stopButton = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/stop.gif")
++    rewindButton = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/Rewind.gif")
+     
+     # Welcome tab image
+-    splash = PhotoImage(file="modules\pmg_tk\startup\splash.GIF")
++    splash = PhotoImage(file="GENTOOPYMOL/pmg_tk/startup/ez-viz/splash.gif")
+     #--------------------------------------#
+     #                                    #
+     #         PRESETS METHODS              #
+@@ -1035,7 +1035,7 @@ class PGUI:
+       if tkMessageBox.askyesno('Ray Trace Image', "Do you want to ray trace you image before saving it? Depending on your image "+
+                                       "this make take a few minutes if you select yes."):
+               cmd.ray()       
+-      file = tkFileDialog.asksaveasfilename(defaultextension=".png", initialdir="C:/Program Files/DeLano Scientific/PyMOL/")
++      file = tkFileDialog.asksaveasfilename(defaultextension=".png", initialdir="./")
+       if len(file)>0:
+               cmd.save(file)
+       
+@@ -1045,7 +1045,7 @@ class PGUI:
+       import tkFileDialog
+       import tkMessageBox 
+       
+-      file = tkFileDialog.asksaveasfilename(defaultextension=".pse", initialdir='C:/Program Files/Delano Scientific/PyMOL/')
++      file = tkFileDialog.asksaveasfilename(defaultextension=".pse", initialdir='./')
+       print file
+         if len(file)>0:
+               cmd.save(file)      
+@@ -1574,7 +1574,7 @@ class PGUI:
+     #------Open Help File---------#
+     def help(self):
+       import webbrowser
+-      webbrowser.open('modules\pmg_tk\startup\Help\EZ-VizWebMain.html')
++      webbrowser.open('GENTOOPYMOL/pmg_tk/startup/ez-vizHelp\EZ-VizWebMain.html')
+                       
+     #---------------------------------------------------------------#
+     #                                                             #
+@@ -2188,7 +2188,7 @@ class PGUI:
+         import tkFileDialog
+     
+         if result == 'Open':
+-            file=tkFileDialog.askopenfilename(initialdir='C:/Documents and Settings/Administrator/My Documents/')
++            file=tkFileDialog.askopenfilename(initialdir='./')
+             if file:
+               cmd.load(file)
+               self.pdbCode = file

diff --git a/sci-chemistry/pymol-plugins-ezviz/metadata.xml b/sci-chemistry/pymol-plugins-ezviz/metadata.xml
new file mode 100644 (file)
index 0000000..bfccced
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-ezviz/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<maintainer>
+       <email>jlec@gentoo.org</email>
+</maintainer>
+<longdescription>
+       EZ-Viz was developed as an assistance tool for the difficult to 
+       understand user interface of PyMOL. The standard interface is 
+       very complex takes a long time to learn, especially for students 
+       unfamiliar with the chemistry and busy researchers with little 
+       time to learn the commands necessary to use the PyMOL software 
+       to its full extent. EZ-Viz allows for users to navigate through 
+       PyMOL using a series of clickable buttons and tabs to complete 
+       all functions of the PyMol software without ever having to type 
+       a single command.
+</longdescription>
+</pkgmetadata>

diff --git a/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild b/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild
new file mode 100644 (file)
index 0000000..eecaef8
--- /dev/null
+++ b/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild
@@ -0,0 +1,63 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-ezviz/pymol-plugins-ezviz-1.0.2005.ebuild,v 1.1 2010/03/27 08:49:17 jlec Exp $
+
+EAPI="3"
+
+SUPPORT_PYTHON_ABIS="1"
+
+inherit eutils python
+
+DESCRIPTION="assistance tool for the difficult to understand user interface of PyMOL"
+HOMEPAGE="http://www.rit.edu/cos/ezviz/index.html"
+SRC_URI="
+       mirror://gentoo/${P}.zip
+       mirror://gentoo/${P}.zip"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+LICENSE="as-is"
+IUSE="doc"
+
+RDEPEND="sci-chemistry/pymol"
+DEPEND="
+       app-arch/unzip
+       ${RDEPEND}"
+
+RESTRICT_PYTHON_ABIS="3.*"
+
+S="${WORKDIR}/EZ_Viz Folder"
+
+src_prepare() {
+       edos2unix ez-viz.py
+       python_copy_sources
+       preperation() {
+               epatch "${FILESDIR}"/gentoo.patch
+               sed \
+                       -e "s:GENTOOPYMOL:${EPREFIX}/$(python_get_sitedir):g" \
+                       -i ez-viz.py || die
+       }
+       python_execute_function -s preperation
+}
+
+src_install() {
+       installation() {
+               insinto $(python_get_sitedir)/pmg_tk/startup/
+               doins *.py || die
+               insinto $(python_get_sitedir)/pmg_tk/startup/ez-viz/
+               doins *.gif || die
+               for gif in *.GIF; do
+                       newins ${gif} ${gif/.GIF/.gif} || die
+               done
+       }
+       python_execute_function -s installation
+       dodoc readme.txt || die
+}
+
+pkg_postinst() {
+       python_mod_optimize pmg_tk/startup
+}
+
+pkg_postrm() {
+       python_mod_cleanup pmg_tk/startup
+}