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sci-chemistry/dssp: Drop old, fixes #525622
authorJustin Lecher <jlec@gentoo.org>
Fri, 26 Dec 2014 13:48:27 +0000 (13:48 +0000)
committerJustin Lecher <jlec@gentoo.org>
Fri, 26 Dec 2014 13:48:27 +0000 (13:48 +0000)
Package-Manager: portage-2.2.15/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

sci-chemistry/dssp/ChangeLog patch | blob | history
sci-chemistry/dssp/Manifest patch | blob | history
sci-chemistry/dssp/dssp-0.70831.ebuild [deleted file] patch | blob | history
sci-chemistry/dssp/dssp-2.0.4.ebuild [deleted file] patch | blob | history
sci-chemistry/dssp/dssp-2.1.0.ebuild [deleted file] patch | blob | history

diff --git a/sci-chemistry/dssp/ChangeLog b/sci-chemistry/dssp/ChangeLog
index d1255c34e0c36ecbb3de13db453f159b3ed43711..05e7e8cdd3ab7c87fee406d488478f1624d873e2 100644 (file)
--- a/sci-chemistry/dssp/ChangeLog
+++ b/sci-chemistry/dssp/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/dssp
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/ChangeLog,v 1.15 2014/12/26 13:16:08 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/ChangeLog,v 1.16 2014/12/26 13:48:27 jlec Exp $
+
+  26 Dec 2014; Justin Lecher <jlec@gentoo.org> -dssp-0.70831.ebuild,
+  -dssp-2.0.4.ebuild, -dssp-2.1.0.ebuild:
+  Drop old, fixes #525622
 
   26 Dec 2014; Agostino Sarubbo <ago@gentoo.org> dssp-2.2.1-r1.ebuild:
   Stable for x86, wrt bug #525624
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index fc374fcfab4135dbdc124b52917f6ec62f73eae6..f2b83146ae0314b9429c49b887dbb1e11d7f5762 100644 (file)
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -1,34 +1,30 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX Makefile 237 SHA256 4caa74d9736641485b2e977f0b810f692b8afde933d80947da338c56a6f53510 SHA512 36e0434fbc2cdba29b9fcf96b3884649c03800a0b6653b62d2884ea871342afaf690a534e712a6f08375cb50f51a3bdca2cadd0cdc0002c28c92bf379ab28486 WHIRLPOOL c9c2ac927e3bd0c38c29bb92516ca36b92273775f2e8b680d4b9c8b4befe7beb9b29947864ee19145eeb956d381dc6e5893fcc5dfd2504833d5f8a92732f1703
 AUX dssp-2.0.4-gcc47.patch 1518 SHA256 869deac0af501fae6588ef2f8223d22af987ad7e7035b61d4d3bf94175221638 SHA512 afaa5ca888b745e482cb4f77345cd00dac14fa8367fa10c95175f9b8a0850ad3a56ccfd1a4ec497a3350929f45c1fc1565218a8bc4d6f8b5e80d7a279c93e8d0 WHIRLPOOL 3584b60d0e63dc151e4cee437d56934a3714bb43ea9536e5c56ef462dfb326d4866b69aca44e1935a68273f76090a3f9d4fc545aaa5e1772bf2766e87ed37c8d
 AUX dssp-2.0.4-gentoo.patch 1931 SHA256 5eb675b623aecd9fd6574a2dfcec4c70e71b7aa56815426067bcd6e6a9af3e78 SHA512 2e22296f344ed6bf3165c9e271332d5ed91d8e648babbdad95d721e4a9305154cbce71e044071b2c6a3ce74b65c5a85670c776bd369eb5f5cbf8e43bdfd7fed9 WHIRLPOOL 34129e782b8c2f058ed1df33c2eb254a53ae0e38b0e4942d70868d78fdd1c29476dff1f43757314143561b85a85bb655c5bae883cc720ff08a20a070af811492
 AUX dssp-2.1.0-gentoo.patch 1513 SHA256 76970f86426bcb1e5155117a784541a51e9489b70263a5f66761058c9251ad25 SHA512 7d192019811a6892031c74e14ef9fc7461e77c050a164698f8c72cff08f81a0e6da202e0915b631a5cd6d910a6114a736c706d47b1fd6474ff77c3700efcd9f9 WHIRLPOOL 0834a1d3eae75de760cb361d21a84c39f3c97cdcd11158c7775812506903a3e288720789c1d2880bb3966b29dadea16d81fd66604c1a7559be399153712a5c33
-DIST dssp-070831cmbi.tar.gz 451919 SHA256 bf5cdd970f92fd80268b87a468d4efe891d3227fd15136147889605299f75661 SHA512 bb845fa83ec5726884a123073021cf6fcc87456b5a796c7033332c0b84def1258c8729d6c86a76f90dc26cc65d2f1685bcf3917b3caca25fe999a2297edac617 WHIRLPOOL c0bf8ad059d7d04bac24b5f415807164552b86bc7f4c08eee75dbe916ccf11e2379ceec084f1cc1cc26d59d5380f4b1dae2b522698ad1907aecfa6d30e89bc72
-DIST dssp-2.0.4.tgz 33515 SHA256 9444f36a26c003c5578aa863c3725ff23b0511abe7d7fc873dbd8294dcb2b66b SHA512 bdb6faf7628fc50c38882c6d4cc18eedaacfc4d55c61bc873cc2d06378d1e782b7bfb2b168442f24b40dcdc2bedb9e08a2c3072ef23735650787ea792476f3c3 WHIRLPOOL 9b3177099e1e9c3424b9a158da52dc51c27736e70000ddde11d163b67eb47a52d0fbc61ea34663ba24d9cbb499d7119bb6bd6417b661bf3eca103e8644a8c24b
-DIST dssp-2.1.0.tgz 95383 SHA256 fdd8bf3703275c43f3c59618159e20914b2f7ca0b51a1fee849a32b21a9f4bb8 SHA512 b136910a05c09249437c37d18e703d1c21c6b4d4c81fe14e6d12457348e94bd0cd37485d59d09eecc612301ac48b7a17aa2e0e5e810542f037bfc7b23a361ab7 WHIRLPOOL be33a076d5e3c98bbd9a8b32c781a7e0fb88260bd9dc13c66658558f4f3778390e58ac5131a80eb8bf24310a28cef38726357b1afaab3a40ae0cdfe78aeb9b7a
 DIST dssp-2.2.1.tgz 47141 SHA256 5fb5e7c085de16c05981e3a72869c8b082911a0b46e6dcc6dbd669c9f267e8e1 SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811 WHIRLPOOL abdb6777ccc06b062e3f20226c555348cd221d9c3e14d2adb9aeb85f14f84db8841c2fbbc4a487f5fa021da6616cddf2e96fde787d7670c419926d24d24944bd
-EBUILD dssp-0.70831.ebuild 1144 SHA256 c63b329b493a70368f51dd5ccdcb83b83819c723d1b78a190862ab79bd459005 SHA512 dd4a86416bfe26a6aeb1e58dc81cfc326b7cd4b40d98e3a3b814d174bb4a2c31d3356025260ddd84cd4ff872b072fd8a796c94da1b6cfe22e4c1e35906a26c5b WHIRLPOOL 9d29c633c252a39a29e35d6fd2dfed74814e3fe2894e6d53e5eee20b16a6c6ad1f52a823aaf09872dfd64cdcf41125c997318cdc2779821b58f105fb86fb305a
-EBUILD dssp-2.0.4.ebuild 934 SHA256 e6a6f7a6b54c8755a1c0f283489b3859231a74870a6f54ddc500c9ce40e62812 SHA512 dccc7ee0758214b24f1936ecde2485ad2fa9a88a12c189a63b4d8b7bc1f208086cf2a8429e04538e425bfd2125785e196c6230d8d6bd9add81abdfa4c60ff8c2 WHIRLPOOL 0c725f0dd619d333205d54c0d14cb4efe6669cd261eb92478765ce73c7fb61eafc2dcaa57c571247bf2e6292b4ed2c609e9e4c1a9743510b7810e75ca034fb3b
-EBUILD dssp-2.1.0.ebuild 901 SHA256 ad85cc9fd93fd323c12ef61340306b0e313effe49d9dca3e615ca319dd4a9cd4 SHA512 57347a857f3667ddc2420186438643c11961fa818756934d6235b596ab34a7788b6d089fd44531778d6af94fd1e6a9483201d49c73dd913d27107820c5d65f5c WHIRLPOOL 39727feb4b4b75859a53fa1ffbeeaedb71d42df3d768266474947958d556248e71f74c1b1b757a933129b0a575bca3f8c089e93483b4fb512a21a44479381101
 EBUILD dssp-2.2.1-r1.ebuild 1003 SHA256 ce87ef00e59d860c27c7f820381c3afe82b6398e0d93852b78e8026493b0bde9 SHA512 9b8dea84830c570bea7c44fef266e6063cecdf96640576de9d8b7d9186fa0929a9c366d4bbee512d70057dac4ed4f1d58eb25f8d978b402e1751e5630a44c5c6 WHIRLPOOL 98fb9116f5c6e5b2b3cc4c3f11509a005b30f4bca49e57dbe262dba8e2561faaaedf2756e0ae934af48ae70d94fbdae526fd8414609ec8be2f4ea56e985cd08d
-MISC ChangeLog 2680 SHA256 31066e534c94672f2c09dfe87d5fe1d58042c692b97d290565ac7d53c1b00e8b SHA512 45bec0754935ddb1d24990a09e85f7fa54ff0e5a9a178ecf740bf27daba76eddc77554673c2f1f274fd2db1d202b39d2a0628851fde3f195ad0d45b8ef176da2 WHIRLPOOL 4fcbb83e25a24cdf8b39f5742d4469f0b81b15be402db88da872e7ce64ee95a61ef67507b4498976d0efeeb20b2d2ba1c08f1655f933889bb78ab66f70285a9e
+MISC ChangeLog 2819 SHA256 17a9ab566f4a9ffce330ff6f9539195d629d4068704016613228097e001f0d59 SHA512 18a1db5a9d735cf84476489478af3ad2c065563a35c0bfd79896d70330330fd9fde9d6798c9da8018c958d9326a27ec84878abe5f713c5b4097403f408edaa8e WHIRLPOOL 050fead24e329351373df61fa34f1b2c5ad7d52aec2ed96c1dedb4303ddd92c34f3f2ac0dbb377d61fabf5028736ed66f7fc8ebd75ac600bc3c3de116e7c29ca
 MISC metadata.xml 234 SHA256 8297e76ecd2cb828f604e9f138b263179eb84beb640215a0f60d7613eb46bb7f SHA512 0e94c0e6570a9267a39968d81c3b80680ccbc6eebb62199e4830b021a114c94a0de17ef2103cef62b7e27da1f51f225a30abb802aff82140ae6dc43366113d31 WHIRLPOOL fa6d4d90b092953b88ed3ad03e1e8c189296d268b39d13a4b4dcb78f0c4456341e3f1b44eea0860054fee43079179cb7cf7a912acf1fbe693ecdca6d9a65f081
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iQIcBAEBCAAGBQJUnV+ZAAoJELp701BxlEWfsWcQAJa6S3pffkqdCTHZFEduqaeA
-Z8Q/XfPa3rPW7MTXi10x0J5HCuPAtT4jDUOHnQa1RAAnwbvC7o3CImySc9hMri8P
-zklnYbXKFPVzqxsy17u+av6lO8no4eUC05i7jccIBR4A/OZTwd6JynhH0cTa5ncA
-yL8+SnEfK/ySPYyFsPte/aJgJa0HU4903H4+FbfjkAy0ibpHjSRuFYei2STiOhDG
-5nNdqjMG3KPRiX2XmgqIHzusy3eec+v1arM06O3tw04BzlebQPshw9bMKHDeYdFl
-wDkX/WGy9o4/gQdK3bZTp8HNNzcwNJHHHYEgHEhCnT1ldehxElaDP/yilAKflDqh
-KgWtTamTKcJhTf6QZR0kuFxqUMqTvOmS2Qvo25OmOuNmy7VThbn2mw9Kzs2E655Z
-3XunXyqsG6OPbPKcQ/pq9/2IPXdTNvXpKu9RsBYn61k3nKlaeU2Pkn0SN2B87IHm
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-/VqT+3QVyMLFYNw5PHgC
-=W/v8
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+kR/9tC3jNjcFIKUgNRmC
+=BP8Q
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/dssp/dssp-0.70831.ebuild b/sci-chemistry/dssp/dssp-0.70831.ebuild
deleted file mode 100644 (file)
index a6b60a4..0000000
--- a/sci-chemistry/dssp/dssp-0.70831.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/dssp-0.70831.ebuild,v 1.1 2012/06/13 11:01:40 jlec Exp $
-
-EAPI="2"
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="http://swift.cmbi.ru.nl/gv/dssp/"
-#SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dsspcmbi.tar.gz"
-SRC_URI="${P/./}cmbi.tar.gz"
-
-LICENSE="free-noncomm"
-SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE=""
-RESTRICT="fetch"
-
-S="${WORKDIR}"/${PN}
-
-pkg_nofetch() {
-       elog "Download ftp://ftp.cmbi.ru.nl/pub/molbio/software/dsspcmbi.tar.gz --"
-       elog "Rename it to ${A} and place it in ${DISTDIR}"
-}
-
-src_prepare() {
-       cp "${FILESDIR}"/Makefile .
-       append-flags -DGCC
-}
-
-src_compile() {
-       emake CC="$(tc-getCC)" || die
-}
-
-src_install() {
-       dobin dssp || die
-       dodoc README.TXT || die
-       dohtml index.html || die
-}
-
-pkg_postinst() {
-       elog "Go to ${HOMEPAGE} and return the license agreement."
-       elog "One of its requirements is citing the article:"
-       elog "Kabsch, W. & Sander, C. Biopolymers 22:2577-2637 (1983)."
-}
diff --git a/sci-chemistry/dssp/dssp-2.0.4.ebuild b/sci-chemistry/dssp/dssp-2.0.4.ebuild
deleted file mode 100644 (file)
index fb11953..0000000
--- a/sci-chemistry/dssp/dssp-2.0.4.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/dssp-2.0.4.ebuild,v 1.2 2013/03/06 13:59:23 jlec Exp $
-
-EAPI=4
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="http://swift.cmbi.ru.nl/gv/dssp/"
-SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/${P}.tgz"
-
-LICENSE="Boost-1.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="dev-libs/boost"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-       tc-export CXX
-
-       cat >> make.config <<- EOF
-       BOOST_LIB_SUFFIX = -mt
-       BOOST_LIB_DIR = "${EPREFIX}/usr/$(get_libdir)"
-       BOOST_INC_DIR = "${EPREFIX}/usr/include"
-       EOF
-
-       epatch \
-               "${FILESDIR}"/${P}-gcc47.patch \
-               "${FILESDIR}"/${P}-gentoo.patch
-}
-
-src_install() {
-       dobin mkdssp
-       dosym mkdssp /usr/bin/dssp
-       doman doc/mkdssp.1
-       dodoc README.txt changelog
-}
diff --git a/sci-chemistry/dssp/dssp-2.1.0.ebuild b/sci-chemistry/dssp/dssp-2.1.0.ebuild
deleted file mode 100644 (file)
index b375c6d..0000000
--- a/sci-chemistry/dssp/dssp-2.1.0.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/dssp-2.1.0.ebuild,v 1.2 2013/07/09 08:34:28 jlec Exp $
-
-EAPI=5
-
-inherit eutils multilib toolchain-funcs
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="http://swift.cmbi.ru.nl/gv/dssp/"
-SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dssp-2/${P}.tgz"
-
-LICENSE="Boost-1.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="dev-libs/boost:="
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-       tc-export CXX
-
-       cat >> make.config <<- EOF
-       BOOST_LIB_SUFFIX = -mt
-       BOOST_LIB_DIR = "${EPREFIX}/usr/$(get_libdir)"
-       BOOST_INC_DIR = "${EPREFIX}/usr/include"
-       EOF
-
-       epatch \
-               "${FILESDIR}"/${P}-gentoo.patch
-}
-
-src_install() {
-       dobin mkdssp
-       dosym mkdssp /usr/bin/dssp
-       doman doc/mkdssp.1
-       dodoc README.txt changelog
-}
Unnamed repository; edit this file 'description' to name the repository.