# ChangeLog for sci-biology/phylip
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.12 2005/10/17 05:14:53 josejx Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/ChangeLog,v 1.13 2005/10/17 17:45:13 ribosome Exp $
+
+ 17 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -phylip-3.63.ebuild:
+ Pruning old version.
17 Oct 2005; Joseph Jezak <josejx@gentoo.org> phylip-3.64.ebuild:
Marked ppc stable for bug #108335.
+++ /dev/null
-MD5 8bf06a775e68163f419e308597e08831 phylip-3.63.tar.bz2 601374
+++ /dev/null
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/phylip/phylip-3.63.ebuild,v 1.6 2005/02/19 04:29:40 j4rg0n Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="PHYLIP - The PHYLogeny Inference Package"
-HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="freedist"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc ppc-macos"
-IUSE=""
-
-DEPEND="virtual/libc
- virtual/x11"
-
-S=${WORKDIR}/${P}/src
-
-src_compile() {
- sed -e "s/CFLAGS =/CFLAGS = ${CFLAGS}/" \
- -e "s/CC = cc/CC = $(tc-getCC)/" \
- -e "s/DC = cc/DC = $(tc-getCC)/" \
- -i Makefile || die
- mkdir ../fonts
- emake -j1 all put || die
- mv ../exe/font* ../fonts
-}
-
-src_install()
-{
- cd ${WORKDIR}/${P}
-
- dobin exe/*
-
- dohtml phylip.html
- insinto /usr/share/doc/${PF}/html/doc
- doins doc/*
-
- insinto /usr/share/${PN}/fonts
- doins fonts/*
-}
# ChangeLog for sci-biology/qrna
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.8 2005/10/17 05:17:02 josejx Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.9 2005/10/17 17:43:24 ribosome Exp $
+
+ 17 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -qrna-2.0.3b.ebuild:
+ Pruning old version.
17 Oct 2005; Joseph Jezak <josejx@gentoo.org> qrna-2.0.3c.ebuild:
Marked ppc stable for bug #108336.
+++ /dev/null
-MD5 4258ab809070c2e6fe10a262b95f24ba qrna-2.0.3b.tar.bz2 8988306
+++ /dev/null
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3b.ebuild,v 1.2 2005/08/07 14:21:59 ribosome Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="Prototype ncRNA genefinder"
-HOMEPAGE="http://www.genetics.wustl.edu/eddy/software/"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc ~amd64"
-IUSE=""
-
-DEPEND="dev-lang/perl
- virtual/libc"
-
-src_compile () {
- sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
- -e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
- -i src/Makefile squid/Makefile
- sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
- -e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \
- -i squid02/Makefile
- cd ${S}/squid
- emake || die
- cd ${S}/squid02
- emake || die
- cd ${S}/src
- emake || die
-}
-
-src_install () {
- cd ${S}/src
- dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle
- cd ${S}/squid02
- dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \
- sfetch shuffle sindex sreformat translate weight
- cd ${S}
- dobin scripts/*
-
- newdoc 00README
- insinto /usr/share/doc/${PF}
- doins documentation/*
-
- insinto /usr/share/${PN}/data
- doins lib/*
- insinto /usr/share/${PN}/demos
- doins Demos/*
-
- # Sets the path to the QRNA data files.
- insinto /etc/env.d
- doins ${FILESDIR}/26qrna
-}
-MD5 cdf569ffe15c6b2523558fec5015df8b ChangeLog 5740
-MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
MD5 07a0dacdefd570a199eda0a6cc0f7323 rebase-510.ebuild 1105
-MD5 05c1988e81e86219aabfd311ce378dc2 rebase-507.ebuild 1099
-MD5 2260532531bb3ba54d56b05b4fbd1af4 rebase-508.ebuild 1105
MD5 69b1a343f30e72fad61432c2246b4c28 rebase-509.ebuild 1099
+MD5 fa8be8bf715470410ea63976d9aa2ca8 ChangeLog 5862
+MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
MD5 8b72021e3a53e0c9ab7acaf2d016637e files/digest-rebase-509 63
MD5 c9253e81b3d46b0f4226ff56b61f4313 files/digest-rebase-510 63
-MD5 50cb82dc8445892e84b0858103dbbc74 files/digest-rebase-507 63
-MD5 a0725a8e8d46017dbfaec45568377efa files/digest-rebase-508 63
# ChangeLog for sci-biology/t-coffee
# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.7 2005/10/17 05:20:43 josejx Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.8 2005/10/17 17:47:06 ribosome Exp $
+
+ 17 Oct 2005; Olivier Fisette <ribosome@gentoo.org> -t-coffee-2.50.ebuild:
+ Pruning old version.
17 Oct 2005; Joseph Jezak <josejx@gentoo.org> t-coffee-2.66.ebuild:
Marked ppc stable for bug #108340.
+++ /dev/null
-MD5 9fe4f7e1d12bc17bc200e04f89898488 T-COFFEE_distribution_Version_2.50.tar.gz 1474719
+++ /dev/null
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-2.50.ebuild,v 1.2 2005/08/07 14:55:45 ribosome Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="A multiple sequence alignment package"
-HOMEPAGE="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-LICENSE="t-coffee"
-
-RESTRICT="nomirror"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="x86"
-
-DEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S=${TCDIR}/t_coffee_source
-
-src_unpack(){
- unpack ${A}
- cd ${S}
- sed -i -e "s/CC = cc/CC = $(tc-getCC) ${CFLAGS}/" makefile || die || die
- cd ${TCDIR}/bin
- sed -i -e 's%chdir "./example/test";%chdir "../example/test";%' test.pl || die
-
-}
-
-src_compile() {
- make all || die
-}
-
-src_install() {
- cd ${TCDIR}/bin
- dobin t_coffee
- insinto /usr/share/${PN}/lib
- doins ${TCDIR}/html
-
- dodoc ${TCDIR}/doc/README4T-COFFEE
- insinto /usr/share/doc/${PF}
- doins ${TCDIR}/doc/t_coffee{_doc.{doc,pdf},.pdf}
- doins ${TCDIR}/doc/*.txt
-
- insinto /usr/share/${PN}/example
- doins ${TCDIR}/example/*
-}
-
-src_test() {
- cd ${TCDIR}/bin
- ./test.pl || die
-}
projects / gentoo.git / commitdiff