Bumped to EAPI=4, dropped old

Package-Manager: portage-2.2.0_alpha84/cvs/Linux x86_64

diff --git a/sci-chemistry/mustang/ChangeLog b/sci-chemistry/mustang/ChangeLog
index 5af71c4ef4d43ac05435142a8318adcccdf83a0c..46c50c0f624ed84be72e48f077dc506d2aabc846 100644 (file)
--- a/sci-chemistry/mustang/ChangeLog
+++ b/sci-chemistry/mustang/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/mustang
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/ChangeLog,v 1.9 2010/07/07 09:04:29 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/ChangeLog,v 1.10 2012/01/11 15:13:19 jlec Exp $
+
+  11 Jan 2012; Justin Lecher <jlec@gentoo.org> -mustang-3.ebuild,
+  mustang-3.2.1.ebuild, metadata.xml:
+  Bumped to EAPI=4, dropped old
 
   07 Jul 2010; Justin Lecher <jlec@gentoo.org> mustang-3.2.1.ebuild:
   Fixing SRC_URI, #327251

diff --git a/sci-chemistry/mustang/Manifest b/sci-chemistry/mustang/Manifest
index e9c62c88a0d127c6c10cf8e335015bdcbe98acae..410ae560f32f6f5654c09a9228314f5fe9848d1a 100644 (file)
--- a/sci-chemistry/mustang/Manifest
+++ b/sci-chemistry/mustang/Manifest
@@ -1,17 +1,15 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
 AUX mustang-3-gcc43.patch 2262 RMD160 d2f9d6de98f679af3b15507b42a410f1e0ba7e08 SHA1 532517644ceaaa0e4263cb04e78f3f47df450592 SHA256 2d9ec5f36d069e51909d56a58003c51bcd409c78946712753d313192c48558b2
-DIST mustang_v.3.tgz 164752 RMD160 e90e55a0cf31955277a68e51f91bc1e00417dacb SHA1 d6e34ecc3094ec1f2c1dbce703a572bf75f406dc SHA256 6d35597930c456d03bb05d644408fd00b1e060d9c8f83353f33b06a42654f552
 DIST mustang_v3.2.1.tgz 161216 RMD160 980dd41e24a65f02e77a4b0d60364bbb8423f0d0 SHA1 0a9b55633bfa836d9851be115e2815f8d17839ca SHA256 38f8ec10f15466a42ade770eb6c3ed0ed2449bb070a53b5e8d3125f2596b1556
-EBUILD mustang-3.2.1.ebuild 1148 RMD160 f18af2945416ebf53f3c2db406e19ea6ddebf350 SHA1 2884948f62fc3af5d2f322c7b0960f2095bdd08a SHA256 7c8ee274df8b522fa1921f928c8d3d1b33e26da083664dc20355e7427eefb9dc
-EBUILD mustang-3.ebuild 1126 RMD160 e7346977f2dd6b295021c7508b9572cb4438ccea SHA1 b1b0f9443f4d61a3fcb0b2a264769fcf73881421 SHA256 7153751c03d8d4506c37424de8d09c27e36d9a9c1320f44e1531c2244df5a178
-MISC ChangeLog 1320 RMD160 feae8c191730469170837ad55e6ff22f76a8d0c4 SHA1 9b00833705f388d2c5e566be2a4a91e3ac5a2dff SHA256 5cf3a36f355785df4a72ccf4634bd2c43442089a059c5afcd4ced146519b0c20
-MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
+EBUILD mustang-3.2.1.ebuild 1108 RMD160 94ea54cc5fcc711bc93e5508022232fa7d0797a1 SHA1 91d1922637bc36111e423408c87ecff2bf2ce991 SHA256 1621ada39f648e87e2c7e36a447ba32dcd6d2c57b700701a60eb4cb3df5c6dcf
+MISC ChangeLog 1458 RMD160 a2e09b7d689ca103bb874e0131bc8471c3b596d8 SHA1 4cf461a8679ed4fdae4ec7cd6dacee4d8729341e SHA256 f5bbd8dbd855ad6cc167677ddf671487a5a6582798c8c17bb32bac616f56bc26
+MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.15 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
-iEYEARECAAYFAkw0QyIACgkQgAnW8HDreRYf6wCeMYXIUX5VaK434InkWgDgaCbo
-gVkAoLnXc4yr5k5YccXQAo0WNdE//rgN
-=RwC2
+iEYEAREKAAYFAk8NpxQACgkQgAnW8HDreRYvwgCgv5AEUGduS+x7fPxIPf6pF3Tn
+XwQAn3m3DQhHvQ5liassbFahnGZVf8dJ
+=3rmC
 -----END PGP SIGNATURE-----

diff --git a/sci-chemistry/mustang/metadata.xml b/sci-chemistry/mustang/metadata.xml
index 9ac9ffdb3a41210a2c529786d05b012774094f2e..e42d0af60f426ab88c9ae496408729e5aaa728e1 100644 (file)
--- a/sci-chemistry/mustang/metadata.xml
+++ b/sci-chemistry/mustang/metadata.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
+       <herd>sci-chemistry</herd>
 </pkgmetadata>

diff --git a/sci-chemistry/mustang/mustang-3.2.1.ebuild b/sci-chemistry/mustang/mustang-3.2.1.ebuild
index 4e30c5eecfb59c88212783165aa28f06744b9cbd..89995aa5677512937d976c52d21202aa385f7993 100644 (file)
--- a/sci-chemistry/mustang/mustang-3.2.1.ebuild
+++ b/sci-chemistry/mustang/mustang-3.2.1.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/mustang-3.2.1.ebuild,v 1.5 2010/07/07 09:04:29 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/mustang-3.2.1.ebuild,v 1.6 2012/01/11 15:13:19 jlec Exp $
 
-EAPI="3"
+EAPI=4
 
 inherit base toolchain-funcs
 
@@ -11,8 +11,8 @@ SRC_P="${PN}_v${PV}"
 MY_P="${MY_PN}_v${PV}"
 
 DESCRIPTION="MUltiple STructural AligNment AlGorithm."
-HOMEPAGE="http://www.cs.mu.oz.au/~arun/mustang/"
-SRC_URI="http://ww2.csse.unimelb.edu.au/~arun/mustang/mustang_v3.2.1.tgz"
+HOMEPAGE="http://www.csse.monash.edu.au/~karun/Site/mustang.html"
+SRC_URI="http://www.csse.unimelb.edu.au/~arun/${PN}/${SRC_P}.tgz"
 
 LICENSE="BSD"
 SLOT="0"
@@ -25,8 +25,7 @@ src_compile() {
        emake \
                CPP=$(tc-getCXX) \
                CPPFLAGS="${CXXFLAGS}" \
-               LDFLAGS="${LDFLAGS}" \
-               || die "emake failed"
+               LDFLAGS="${LDFLAGS}"
 }
 
 src_test() {
@@ -34,9 +33,9 @@ src_test() {
 }
 
 src_install() {
-       newbin bin/${P} mustang || die
-       doman man/${PN}.1 || die
-       dodoc README || die
+       newbin bin/${P} mustang
+       doman man/${PN}.1
+       dodoc README
 }
 
 pkg_postinst() {

diff --git a/sci-chemistry/mustang/mustang-3.ebuild b/sci-chemistry/mustang/mustang-3.ebuild
deleted file mode 100644 (file)
index 3cc52e0..0000000
--- a/sci-chemistry/mustang/mustang-3.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mustang/mustang-3.ebuild,v 1.4 2008/12/19 20:22:42 loki_val Exp $
-
-inherit base toolchain-funcs
-
-MY_PN="MUSTANG"
-SRC_P="${PN}_v.${PV}"
-MY_P="${MY_PN}_v.${PV}"
-DESCRIPTION="MUltiple STructural AligNment AlGorithm."
-HOMEPAGE="http://www.cs.mu.oz.au/~arun/mustang/"
-SRC_URI="${HOMEPAGE}${SRC_P}.tgz"
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="x86 ~amd64"
-IUSE=""
-RDEPEND=""
-DEPEND="${RDEPEND}"
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=( "${FILESDIR}/${P}-gcc43.patch" )
-
-src_compile() {
-       emake \
-               CPP=$(tc-getCXX) \
-               CPPFLAGS="${CXXFLAGS}" \
-               LDFLAGS="${LDFLAGS}" \
-               || die "emake failed"
-}
-
-src_test() {
-       ./bin/MUSTANG_v.${PV} -f ./data/test/test_zf-CCHH
-}
-
-src_install() {
-       newbin bin/MUSTANG_v.3 mustang
-       mv mustang mustang.1
-}
-
-pkg_postinst() {
-       elog "If you use this program for an academic paper, please cite:"
-       elog "Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, and Arthur M. Lesk"
-       elog "Proteins: Structure, Function, and Bioinformatics. 64(3):559-574, Aug. 2006"
-}