# ChangeLog for sci-chemistry/ccpn
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.78 2011/12/21 13:46:42 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.79 2012/01/09 12:42:11 jlec Exp $
+
+*ccpn-2.2.1_p120109 (09 Jan 2012)
+*ccpn-2.1.5_p120109 (09 Jan 2012)
+
+ 09 Jan 2012; Justin Lecher <jlec@gentoo.org> +ccpn-2.1.5_p120109.ebuild,
+ +ccpn-2.2.1_p120109.ebuild:
+ Todays Python Patches
*ccpn-2.2.1_p111221 (21 Dec 2011)
*ccpn-2.1.5_p111221 (21 Dec 2011)
DIST ccpn-update-2.1.5-111213.patch.xz 104892 RMD160 d2a83a0b809a91f8f8422a24c11ce20a8e2cde8d SHA1 ae819afdf4cb6aa39c9059cd1bb96d3d188a86fb SHA256 72bbe7f2a68ee20eca029685b8b3daaf15f71d164767b3aa5d222c3a5de779b1
DIST ccpn-update-2.1.5-111220.patch.xz 105472 RMD160 f8c358e7bc7757a4f645a2f26fa38e0159e5bc2f SHA1 21721845d3f0df77c548a3e5774ed5a82f3d12df SHA256 a4d8d4982c8bf63031cd11cbe67121a598b97f1c490862c363555bf9c2f11140
DIST ccpn-update-2.1.5-111221.patch.xz 105424 RMD160 70f3b43b0ef4a827cb43f4673ca426deacff13d5 SHA1 6a240d2db8afe9166c8965207ac6701859089fba SHA256 fa9385c46b2aa535917b68de1c9ac0a0dcf0e4a3b2362ec75274fe8374289ca6
+DIST ccpn-update-2.1.5-120109.patch.xz 105508 RMD160 a485389af341270598a134a37e061674b935b60b SHA1 b0b3159ab01eda8d93971172bf9b62a588604d30 SHA256 024d65a1e2d82815db891ef920c10442366413d9aeefe7dd6d0d17d7bdbb37ba
DIST ccpn-update-2.2.1-111213.patch.xz 81520 RMD160 55038a1272f8e01ce54fefdba081ee51ec5d4f36 SHA1 0bbd8c029a98b282002d8b5385a85355722de323 SHA256 807cef8e8b2822e178d50695c7e234ea8c243264a4711610f6a95e30e1b40d12
DIST ccpn-update-2.2.1-111220.patch.xz 82840 RMD160 c0fb328ad93d7f07e1f0d45215d7686204315f91 SHA1 7b2ef76c62e85fcb4c5c95be053a9e281bc3d59d SHA256 f8942568e4f859da71e5a38b279355222882de19328501a0297bcddefef75c9f
DIST ccpn-update-2.2.1-111221.patch.xz 82988 RMD160 e1ce373080f97411d9b00a269d8ed29ab8a4db0e SHA1 fe68eccce53bbbc7cfd69d398381cf3b28303c2d SHA256 6482ac0a90b34e4fbb6944a2f158d8743f6a23d7b28193b28fe7517044e27a76
+DIST ccpn-update-2.2.1-120109.patch.xz 85304 RMD160 3f2662f16f8c52b8c3813a0a45ad12f26bb8ba3c SHA1 267686361c0ee730d132beede957591428cd7016 SHA256 2997ae03541267e75577f4df317c6a9b69a282723271a6689265a9c2309c5769
EBUILD ccpn-2.1.3.1_p100806.ebuild 5188 RMD160 b66825e37b79a5f6ec6635b9f3236d1cda2da672 SHA1 458f516ffad25d9283b21c9dfb8e50c6323f4264 SHA256 ff57abefefd3bb128a3f96bf039cbaa5ed97350f6b41fdbdd4b4365ff9e68e51
EBUILD ccpn-2.1.5_p111213.ebuild 5773 RMD160 4fc120d9e6c5ecfd375a3df14a7b8b9afdebb3b5 SHA1 30bb2d2e22087ac6c93434863f1347db50f2514f SHA256 46de0ddcfd2fcb196dfb9ceb07c74c25ff3c8f4655b55f5e4b2f1d90a3787641
EBUILD ccpn-2.1.5_p111220.ebuild 5773 RMD160 726f13ab2aa4532df15cbdc5a96b15293e53791e SHA1 5038f1c70ee0979181278ad3bbc9cdafff54d81c SHA256 7c21ffd5368b3a1c46ee838be8b970c6f7af371ea1048a253eca9c4c73af40c8
EBUILD ccpn-2.1.5_p111221.ebuild 5773 RMD160 466f12257ec67eb942856702439f3f3b980618e7 SHA1 c7b160431d76ec2d619d4af84c24daf29a7594af SHA256 64429004d43a013ddeaad65e5aa7e6df9aafb1a5ff05455864f8ed88918bc5de
+EBUILD ccpn-2.1.5_p120109.ebuild 5773 RMD160 e382dac6b717b686f0f3d602ef5a1ca37835196e SHA1 57259c9f366f8f30fd2778491387d0235eff1269 SHA256 13a02a66fd2823d55529f6ccfde31e8523e211f62d892a93af262ff37e29313f
EBUILD ccpn-2.2.1_p111213.ebuild 5788 RMD160 49f50c489d3eee93f80e1548c66fe2acf1131e20 SHA1 fe36614826a38746d32f32071f8583744fa263fd SHA256 2f25c2e6e348f37d95bc89dc36137303def1c66a02ff1603eedb8c32f61867e4
EBUILD ccpn-2.2.1_p111220.ebuild 5788 RMD160 abb85d91207669ef94be18d38b4e9efc5dca135b SHA1 e07108a62c4867be2d4538a0ecf09bf5ac4dd968 SHA256 37885cacf0a4e97d05201b18949b87889c5e5965f04434399a2e52b24d30cf98
EBUILD ccpn-2.2.1_p111221.ebuild 5788 RMD160 e722eaef088dbe8f273190fed6331157ab57c553 SHA1 97328118dcde05d92d7d5410f61a8c2b9b5badc5 SHA256 72216a2ec437f6cafa02eb435fffcf97bc274c5d6009f303a3eb214bd08badf5
-MISC ChangeLog 15971 RMD160 327d2cf3b19ca3896e89d61188e7a29f251ebb30 SHA1 34239192b5ccea8cd4abac9554b38722311034c4 SHA256 05786084d91cf44b8c6a11f0b5cd3c31cd3a423e7b9cedbcd5ef50d28171d674
+EBUILD ccpn-2.2.1_p120109.ebuild 5788 RMD160 2497c798c7de97c708b7835810623a0384d1e218 SHA1 233aa1787b5dfa4e39fe7bd330d38255e77be5cb SHA256 bd873ee86eff68721575836e60a989e966ace314dd34dd07dd3ece180b899239
+MISC ChangeLog 16170 RMD160 ade7204956f1edd0a9e1990cf71f194b9e93b019 SHA1 b38a208282c65b6f7aab5c8867fdf845fe74d6e3 SHA256 1afcaa694756d306bb7c967050ed859ccfdeea97c44d33c8e29cd54e88d2ac85
MISC metadata.xml 322 RMD160 9fd5fba7405b689fc39a089d81ffdaa9f961b514 SHA1 0c31132b25fca04cff97ef11fdc11940f90c77d0 SHA256 7468ba4c27b879e7ed5f82274f5837e51f1f389673a33b9e26e1756a6b0783df
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--- /dev/null
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p120109.ebuild,v 1.1 2012/01/09 12:42:11 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2:2.5"
+PYTHON_USE_WITH="ssl tk"
+
+inherit eutils portability python toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+ [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="extendnmr +opengl"
+
+RDEPEND="
+ dev-lang/tk[threads]
+ >=dev-python/numpy-1.4
+ >=dev-tcltk/tix-8.4.3
+ =sci-libs/ccpn-data-"${MY_MAJOR}"*
+ >=sci-libs/ccpn-data-2.1.5_p111011
+ sci-biology/psipred
+ x11-libs/libXext
+ x11-libs/libX11
+ opengl? (
+ media-libs/freeglut
+ dev-python/pyglet )"
+# We need to fix this
+# sci-chemistry/mdd
+DEPEND="${RDEPEND}"
+PDEPEND="
+ extendnmr? (
+ <=sci-chemistry/aria-2.3.2
+ sci-chemistry/prodecomp )"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
+
+pkg_setup() {
+ python_set_active_version 2
+}
+
+src_prepare() {
+ [[ -n ${PATCHSET} ]] && \
+ epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+ epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+
+ sed \
+ -e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
+ -e "s:weights_s:weights:g" \
+ -i python/ccpnmr/analysis/wrappers/Psipred.py || die
+
+ local tk_ver
+ local myconf
+
+ tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+ if use opengl; then
+ GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+ IGNORE_GL_FLAG=""
+ GL_FLAG="-DUSE_GL_TRUE"
+ GL_DIR="${EPREFIX}/usr"
+ GL_LIB="-lglut -lGLU -lGL"
+ GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+ GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+ else
+ IGNORE_GL_FLAG="-DIGNORE_GL"
+ GL_FLAG="-DUSE_GL_FALSE"
+ fi
+
+ GLUT_NOT_IN_GL=""
+ GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+ rm -rf data model doc license || die
+
+ sed \
+ -e "s|/usr|${EPREFIX}/usr|g" \
+ -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
+ -e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
+ -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
+ -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
+ -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
+ -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
+ -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
+ -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
+ -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
+ -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
+ -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
+ -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
+ -e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
+ c/environment_default.txt > c/environment.txt
+}
+
+src_compile() {
+ emake -C c all links || die
+}
+
+src_install() {
+ local libdir
+ local tkver
+ local _wrapper
+
+ find . -name "*.pyc" -type d -delete
+
+ libdir=$(get_libdir)
+ tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+ _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara"
+ use extendnmr && _wrapper="${_wrapper} extendNmr"
+ for wrapper in ${_wrapper}; do
+ sed \
+ -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
+ -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
+ -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
+ -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
+ -e "s|gentoopython|${EPREFIX}/usr/bin/python|g" \
+ -e "s|gentoousr|${EPREFIX}/usr|g" \
+ -e "s|//|/|g" \
+ "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+ dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
+ done
+
+ local in_path
+ local files
+ local pydocs
+
+ pydocs="$(find python -name doc -type d)"
+ rm -rf ${pydocs} || die
+
+ in_path=$(python_get_sitedir)/${PN}
+
+ for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+ sed \
+ -e 's|#from __future__|from __future__|g' \
+ -i ${i} || die
+ done
+
+ insinto ${in_path}
+
+ dodir ${in_path}/c
+
+ ebegin "Installing main files"
+ doins -r python || die "main files installation failed"
+ eend
+
+ einfo "Adjusting permissions"
+
+ files="
+ cambridge/c/BayesPeakSeparator.so
+ ccp/c/StructUtil.so
+ ccp/c/StructStructure.so
+ ccp/c/StructBond.so
+ ccp/c/StructAtom.so
+ ccpnmr/c/DyAtomCoord.so
+ ccpnmr/c/DyDistConstraint.so
+ ccpnmr/c/DyDistForce.so
+ ccpnmr/c/AtomCoordList.so
+ ccpnmr/c/DyAtomCoordList.so
+ ccpnmr/c/ContourStyle.so
+ ccpnmr/c/ContourLevels.so
+ ccpnmr/c/SliceFile.so
+ ccpnmr/c/PeakCluster.so
+ ccpnmr/c/Dynamics.so
+ ccpnmr/c/Bacus.so
+ ccpnmr/c/Midge.so
+ ccpnmr/c/DyDistConstraintList.so
+ ccpnmr/c/WinPeakList.so
+ ccpnmr/c/PeakList.so
+ ccpnmr/c/DistConstraint.so
+ ccpnmr/c/CloudUtil.so
+ ccpnmr/c/DistForce.so
+ ccpnmr/c/DistConstraintList.so
+ ccpnmr/c/AtomCoord.so
+ ccpnmr/c/DyDynamics.so
+ ccpnmr/c/ContourFile.so
+ memops/c/ShapeFile.so
+ memops/c/BlockFile.so
+ memops/c/PdfHandler.so
+ memops/c/MemCache.so
+ memops/c/FitMethod.so
+ memops/c/PsHandler.so
+ memops/c/GlHandler.so
+ memops/c/StoreFile.so
+ memops/c/StoreHandler.so
+ memops/c/TkHandler.so"
+ for FILE in ${files}; do
+ fperms 755 ${in_path}/python/${FILE}
+ done
+}
+
+pkg_postinst() {
+ python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+ python_mod_cleanup ${PN}
+}
--- /dev/null
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.1_p120109.ebuild,v 1.1 2012/01/09 12:42:11 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2:2.5"
+PYTHON_USE_WITH="ssl tk"
+
+inherit eutils portability python toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+ [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="extendnmr +opengl"
+
+RDEPEND="
+ dev-lang/tk[threads]
+ >=dev-python/numpy-1.4
+ >=dev-tcltk/tix-8.4.3
+ =sci-libs/ccpn-data-"${MY_MAJOR}"*
+ >=sci-libs/ccpn-data-2.2.1_p111011
+ sci-biology/psipred
+ x11-libs/libXext
+ x11-libs/libX11
+ opengl? (
+ media-libs/freeglut
+ dev-python/pyglet )"
+# We need to fix this
+# sci-chemistry/mdd
+DEPEND="${RDEPEND}"
+PDEPEND="
+ extendnmr? (
+ >=sci-chemistry/aria-2.3.2-r1
+ sci-chemistry/prodecomp )"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
+
+pkg_setup() {
+ python_set_active_version 2
+}
+
+src_prepare() {
+ [[ -n ${PATCHSET} ]] && \
+ epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+ epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+
+ sed \
+ -e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
+ -e "s:weights_s:weights:g" \
+ -i python/ccpnmr/analysis/wrappers/Psipred.py || die
+
+ local tk_ver
+ local myconf
+
+ tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+ if use opengl; then
+ GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+ IGNORE_GL_FLAG=""
+ GL_FLAG="-DUSE_GL_TRUE"
+ GL_DIR="${EPREFIX}/usr"
+ GL_LIB="-lglut -lGLU -lGL"
+ GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+ GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+ else
+ IGNORE_GL_FLAG="-DIGNORE_GL"
+ GL_FLAG="-DUSE_GL_FALSE"
+ fi
+
+ GLUT_NOT_IN_GL=""
+ GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+ rm -rf data model doc license || die
+
+ sed \
+ -e "s|/usr|${EPREFIX}/usr|g" \
+ -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
+ -e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
+ -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
+ -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
+ -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
+ -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
+ -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
+ -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
+ -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
+ -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
+ -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
+ -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
+ -e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
+ c/environment_default.txt > c/environment.txt
+}
+
+src_compile() {
+ emake -C c all links || die
+}
+
+src_install() {
+ local libdir
+ local tkver
+ local _wrapper
+
+ find . -name "*.pyc" -type d -delete
+
+ libdir=$(get_libdir)
+ tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+ _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara"
+ use extendnmr && _wrapper="${_wrapper} extendNmr"
+ for wrapper in ${_wrapper}; do
+ sed \
+ -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
+ -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
+ -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
+ -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
+ -e "s|gentoopython|${EPREFIX}/usr/bin/python|g" \
+ -e "s|gentoousr|${EPREFIX}/usr|g" \
+ -e "s|//|/|g" \
+ "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+ dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
+ done
+
+ local in_path
+ local files
+ local pydocs
+
+ pydocs="$(find python -name doc -type d)"
+ rm -rf ${pydocs} || die
+
+ in_path=$(python_get_sitedir)/${PN}
+
+ for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+ sed \
+ -e 's|#from __future__|from __future__|g' \
+ -i ${i} || die
+ done
+
+ insinto ${in_path}
+
+ dodir ${in_path}/c
+
+ ebegin "Installing main files"
+ doins -r python || die "main files installation failed"
+ eend
+
+ einfo "Adjusting permissions"
+
+ files="
+ cambridge/c/BayesPeakSeparator.so
+ ccp/c/StructUtil.so
+ ccp/c/StructStructure.so
+ ccp/c/StructBond.so
+ ccp/c/StructAtom.so
+ ccpnmr/c/DyAtomCoord.so
+ ccpnmr/c/DyDistConstraint.so
+ ccpnmr/c/DyDistForce.so
+ ccpnmr/c/AtomCoordList.so
+ ccpnmr/c/DyAtomCoordList.so
+ ccpnmr/c/ContourStyle.so
+ ccpnmr/c/ContourLevels.so
+ ccpnmr/c/SliceFile.so
+ ccpnmr/c/PeakCluster.so
+ ccpnmr/c/Dynamics.so
+ ccpnmr/c/Bacus.so
+ ccpnmr/c/Midge.so
+ ccpnmr/c/DyDistConstraintList.so
+ ccpnmr/c/WinPeakList.so
+ ccpnmr/c/PeakList.so
+ ccpnmr/c/DistConstraint.so
+ ccpnmr/c/CloudUtil.so
+ ccpnmr/c/DistForce.so
+ ccpnmr/c/DistConstraintList.so
+ ccpnmr/c/AtomCoord.so
+ ccpnmr/c/DyDynamics.so
+ ccpnmr/c/ContourFile.so
+ memops/c/ShapeFile.so
+ memops/c/BlockFile.so
+ memops/c/PdfHandler.so
+ memops/c/MemCache.so
+ memops/c/FitMethod.so
+ memops/c/PsHandler.so
+ memops/c/GlHandler.so
+ memops/c/StoreFile.so
+ memops/c/StoreHandler.so
+ memops/c/TkHandler.so"
+ for FILE in ${files}; do
+ fperms 755 ${in_path}/python/${FILE}
+ done
+}
+
+pkg_postinst() {
+ python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+ python_mod_cleanup ${PN}
+}
projects / gentoo.git / commitdiff