sci-biology/rebase: Version BUmp; Drop old

Package-Manager: portage-2.2.15/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 1ba588975dfc8d213dbcc70d8ba7943f4654d803..95ce4e3c6fbabdff1ce2842bde632843aae72462 100644 (file)
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/rebase
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.137 2014/12/31 16:10:56 ago Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.138 2015/01/04 11:28:58 jlec Exp $
+
+*rebase-1501 (04 Jan 2015)
+
+  04 Jan 2015; Justin Lecher <jlec@gentoo.org> -rebase-1403.ebuild,
+  -rebase-1406.ebuild, -rebase-1408.ebuild, -rebase-1409.ebuild,
+  -rebase-1410.ebuild, +rebase-1501.ebuild:
+  Version BUmp; Drop old
 
   31 Dec 2014; Agostino Sarubbo <ago@gentoo.org> rebase-1411.ebuild:
   Stable for ppc, wrt bug #531422

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 477a5d74551c610b198bb679d26c528ed771d27f..3ed6d3ebca41c7c6a9f9f9826a2f7ffca2faa4e3 100644 (file)
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,36 +1,30 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
-DIST rebase-1403.tar.xz 56541864 SHA256 947f40e42fdd58f0509043c174e87dc83fb74c9348d3c40bea878c99133fd5b1 SHA512 7f9a6b4f0a5d1f79f5aa06ae87514124d4ed5472d0dda4dbe110d5a6e8bbfaabf56d01fac164f40507a62ffd1816b4675461a66a6ff56e92bfa204140430d04c WHIRLPOOL 48cc05dd873e3674dea592a4fe35454028d58bcd3e334fd88ca89b30d2ba741db9086885a358779ab6f592c81e0aa8b77afa21917ec4176898d6351a49372a55
-DIST rebase-1406.tar.xz 92309328 SHA256 70d2c174c64416432b1afa9c26cbe17d5fe6c5514c8f79ab74cfa3bdfe26c03f SHA512 f73c4614847c20d21194fdd71cb387f2e5a4911420b9a8fe854f11c012a97089d34d5f9242a398601f4da2f3af6095d5746d6889014144404bdc71426bbaa1e1 WHIRLPOOL 604497a74d89f590e84e3e7953765b0b94d9310e7c0b09e1cdd8cca659790e5a86c8b353d3e2f4f0c7b6a10e35adcef959d9d1a8ef3d335b9804f28506197083
-DIST rebase-1408.tar.xz 61903408 SHA256 30ae3e5fa9d0af9a92a13a6146a9ae9ee6d31af09ad600e28fc7aedb36c4ce18 SHA512 b753a1bd765124d60b6014bae55f03e322b54722c482bf70688163b585a1a757d15a03e397a33d1145b0aae00c85a0ee7300db93bc10cd454603081b9ae21cca WHIRLPOOL 4beb81d20a13c152bbbd1893bd3810a31311a93dd7be04ea15e160bd83ed56f4ff4ccd78b75a4ccac7b356ac0e6faec1da234162b13bb9ffc684f8f7959cb207
-DIST rebase-1409.tar.xz 62436500 SHA256 fca116f98ca996fded3edaef27ce0be190ec1b66fb03bfd23513dd531e01d8a0 SHA512 a054d4b6b2bc5a803c742af31a11c44f12bd7ad0479be93b3414765b1ffaa0bd2c28fc69517ad840efb2d9dedd964354ce1ea45ba5f88fa252f9014d1bb621c5 WHIRLPOOL 2ca0829c430600d8ca96570c5072ef4b7cd7679405acdfaa70f28c7bf6ac39c2c00fa1da58abfd99785c1d5be691cd8c0250161f18f7e9502605bf3b311ef62c
-DIST rebase-1410.tar.xz 63356808 SHA256 c7440e82922d3013331e54d1111b6199446410ef6e7ecc15ad537cdbc150e586 SHA512 7df88c0a4b0abcbd75288c10209c8b1b9a3dcc8bc906af12b47e99e61251c7fa4dafa135342097f31545bef1584e129cbc708b3e4154cb211b7f2a0bc7df16b7 WHIRLPOOL b38239de5f39202cd639ab477d254cde747a7285851fa0a5c69b52908eaadb3b1dab302d8250227cc4a47f43d22597754a4d629df5fb0ae21ae3f1746d87a6da
 DIST rebase-1411.tar.xz 63580536 SHA256 25539f305825ddfd655709f6a5985eaae7315b9f8375dac85b40e1eb2b5abaf2 SHA512 b0d63438c00b8f197c6ae915969cca392ed829c5e7a03cc9abdc2fb2bdbc86896f537df427d979219bd8f5a30cd2dacf0089e4f4ed82c4644ab7e5ecaf4b84eb WHIRLPOOL d0691d415ae576c8f82d5a8dbbea0118f47ac0ae2fb43b66e7ec004a82cc784fdcdd83885f19ce129d1b999e4b84ea0babb0e1d22a159ee8fef9540712b62be0
 DIST rebase-1412.tar.xz 65051884 SHA256 0056bf0b7f965749aa6704012417db74003576a77fbaee393123c88fab567d49 SHA512 e96d4c003b606eddb1274aa5b9baf422bb49310e5cdeba38c2c918c571420ece300dddff431160199950079b409d5aafe5fc322a1b9aa1f2727f79e571f76fb8 WHIRLPOOL 53ceb8b4a83048d5792fa569dea98830c3ae94400759e28822df7533569d26047f85aca9b0abd861ac89a944a83fb90d224b79fc2bfce4f79ff77daeb69c1b72
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+DIST rebase-1501.tar.xz 66478008 SHA256 4ffba0e98524cb25389f6cb0079792a4efc1e0f95101961105ecd67209c79f94 SHA512 46656da15d297d3a58382559da16659f0c01611910cde4284ef45e3f0d181bcb7878ba32465ea154e45a3658b731d4cb2a5a25f62105a05daf284bbd78df3592 WHIRLPOOL 57fdd5ddf01842e0214f64231c9171234e7dedd06b7d1faeef996142c67bfbfa582cd0a85f0156f9f51f1c6c12e7603c2b1aba7c4edb8c6e5c11af6247b84e02
 EBUILD rebase-1411.ebuild 1201 SHA256 fb02e762f8ed0d3f852ff0685928ba7a9919b0182a6ad21f813f103a72640a11 SHA512 0a96c1d1aedc288396ce3ca052bebc27c7400d4d2a1c6e679f2683f59f6694dacdb11bc7018585dd692294c8bcd81b0bafbcb184ae7c9f9bd1b9e73b0422f47a WHIRLPOOL 41c6a22e78c7a76bd1b15fe5b1b052c96011301bc60b527d6540efe4eaeb6e0c52af05cb7c2901024cb71c90dc1b43de24278366d8d8716eaf4481015d10545a
 EBUILD rebase-1412.ebuild 1205 SHA256 13858f271bb5d04deda937fe018d80d61f4874e5d5698f51e6184c7920fb7023 SHA512 2e174198e2bbc4a2220026eb96e78f08d19b71ea28c58f8660204cdc956e9a19e0f37a942688bb958140d824b8f50b09c222763122e4b64979a3c9d03741d1f1 WHIRLPOOL 222bccd40e874421787298c0d0a88041d89d7e00a92727bed406c30cff3d82d535b0f36a6b826909960149b58eb633ab6449ee37eee4e36496bc20c68261c8aa
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+MISC ChangeLog 17872 SHA256 a6ec19c7420319f67fdee33c7886cb72099265b5e744b6313ee0eba7d67425dd SHA512 8efc374ea5d536349f602ff80e63953142b7e77127cabe1bb32d72e5cd99db33fa4321f3cff5cc0edca7321a4fae28dd3c73aa517ff52f1281368a90c73fddb5 WHIRLPOOL 62c964cf188cfe253089b69fd1c7208027081cd4840e8a7cbabfd54419dcdb3bbde0112a565757025f99f192fe2139b862ac079bf6117db720c6dfd464d4b88f
 MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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diff --git a/sci-biology/rebase/rebase-1403.ebuild b/sci-biology/rebase/rebase-1403.ebuild
deleted file mode 100644 (file)
index 0263cd4..0000000
--- a/sci-biology/rebase/rebase-1403.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1403.ebuild,v 1.4 2014/08/03 18:37:36 ago Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-       if use emboss; then
-               echo; einfo "Indexing Rebase for usage with EMBOSS."
-               mkdir REBASE || die
-               EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-                               -protofile proto.${MY_PV} -equivalences \
-                               || die "Indexing Rebase failed."
-               echo
-       fi
-}
-
-src_install() {
-       if ! use minimal; then
-               insinto /usr/share/${PN}
-               doins withrefm.${MY_PV} proto.${MY_PV}
-       fi
-       newdoc REBASE.DOC README
-       if use emboss; then
-               insinto /usr/share/EMBOSS/data/REBASE
-               doins REBASE/embossre.{enz,ref,sup}
-               insinto /usr/share/EMBOSS/data
-               doins REBASE/embossre.equ
-       fi
-}

diff --git a/sci-biology/rebase/rebase-1408.ebuild b/sci-biology/rebase/rebase-1408.ebuild
deleted file mode 100644 (file)
index e21898a..0000000
--- a/sci-biology/rebase/rebase-1408.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1408.ebuild,v 1.1 2014/07/31 08:44:34 jlec Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-       if use emboss; then
-               echo; einfo "Indexing Rebase for usage with EMBOSS."
-               mkdir REBASE || die
-               EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-                               -protofile proto.${MY_PV} -equivalences \
-                               || die "Indexing Rebase failed."
-               echo
-       fi
-}
-
-src_install() {
-       if ! use minimal; then
-               insinto /usr/share/${PN}
-               doins withrefm.${MY_PV} proto.${MY_PV}
-       fi
-       newdoc REBASE.DOC README
-       if use emboss; then
-               insinto /usr/share/EMBOSS/data/REBASE
-               doins REBASE/embossre.{enz,ref,sup}
-               insinto /usr/share/EMBOSS/data
-               doins REBASE/embossre.equ
-       fi
-}

diff --git a/sci-biology/rebase/rebase-1409.ebuild b/sci-biology/rebase/rebase-1409.ebuild
deleted file mode 100644 (file)
index b7a5477..0000000
--- a/sci-biology/rebase/rebase-1409.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1409.ebuild,v 1.1 2014/09/15 16:58:59 jlec Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-       if use emboss; then
-               echo; einfo "Indexing Rebase for usage with EMBOSS."
-               mkdir REBASE || die
-               EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-                               -protofile proto.${MY_PV} -equivalences \
-                               || die "Indexing Rebase failed."
-               echo
-       fi
-}
-
-src_install() {
-       if ! use minimal; then
-               insinto /usr/share/${PN}
-               doins withrefm.${MY_PV} proto.${MY_PV}
-       fi
-       newdoc REBASE.DOC README
-       if use emboss; then
-               insinto /usr/share/EMBOSS/data/REBASE
-               doins REBASE/embossre.{enz,ref,sup}
-               insinto /usr/share/EMBOSS/data
-               doins REBASE/embossre.equ
-       fi
-}

diff --git a/sci-biology/rebase/rebase-1410.ebuild b/sci-biology/rebase/rebase-1410.ebuild
deleted file mode 100644 (file)
index c476acf..0000000
--- a/sci-biology/rebase/rebase-1410.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1410.ebuild,v 1.4 2014/12/31 16:00:50 ago Exp $
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
-       if use emboss; then
-               echo; einfo "Indexing Rebase for usage with EMBOSS."
-               mkdir REBASE || die
-               EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
-                               -protofile proto.${MY_PV} -equivalences \
-                               || die "Indexing Rebase failed."
-               echo
-       fi
-}
-
-src_install() {
-       if ! use minimal; then
-               insinto /usr/share/${PN}
-               doins withrefm.${MY_PV} proto.${MY_PV}
-       fi
-       newdoc REBASE.DOC README
-       if use emboss; then
-               insinto /usr/share/EMBOSS/data/REBASE
-               doins REBASE/embossre.{enz,ref,sup}
-               insinto /usr/share/EMBOSS/data
-               doins REBASE/embossre.equ
-       fi
-}

diff --git a/sci-biology/rebase/rebase-1406.ebuild b/sci-biology/rebase/rebase-1501.ebuild
similarity index 87%
rename from sci-biology/rebase/rebase-1406.ebuild
rename to sci-biology/rebase/rebase-1501.ebuild
index b09b646a59c870d28f2da9f91d0cbeb12ff650e0..50fb7148770d7ead1816cf6d99afc3d198e7667a 100644 (file)
--- a/sci-biology/rebase/rebase-1406.ebuild
+++ b/sci-biology/rebase/rebase-1501.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1406.ebuild,v 1.1 2014/06/04 06:30:11 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1501.ebuild,v 1.1 2015/01/04 11:28:58 jlec Exp $
 
 EAPI=5