Add missing deps, bug #545472

Package-Manager: portage-2.2.18/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index 93aa365d3edfb53a3fac9ab615875a5482b7bed4..cd1990b8497d305b329243291b072f167e554e46 100644 (file)
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.54 2014/08/09 22:46:03 zlogene Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.55 2015/04/08 08:03:21 jlec Exp $
+
+  08 Apr 2015; Justin Lecher <jlec@gentoo.org> bioperl-1.6.9.ebuild,
+  bioperl-9999-r1.ebuild, metadata.xml:
+  Add missing deps, bug #545472
 
   09 Aug 2014; Mikle Kolyada <zlogene@gentoo.org> bioperl-1.6.0-r2.ebuild,
   bioperl-1.6.9.ebuild, bioperl-9999-r1.ebuild:

diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 94dff6b872b4d2550ec0a27cd1a67ae630828aa6..ede9af39bef270b59825863d9b93bf2cd60df0cc 100644 (file)
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,19 +1,29 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 DIST BioPerl-1.6.0.tar.bz2 5640786 SHA256 50a35b1b2552c8f54c83f2bbba7b36264e94443374b86b389208437c8cae3bf6
 DIST BioPerl-1.6.901.tar.gz 12284856 SHA256 8c74bde900222ce3926491ee103997c841c8755148c8dcaf0be1abfd61c5ac01 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 WHIRLPOOL feb1f93a617e0135ab84b0eeb36ac986e817ce76ada0f40518090f6a480fbb1047339b33fcd11ccff444f89c4a06c41b5abaab66b662a50f17ae34f9b22d66fd
 EBUILD bioperl-1.6.0-r2.ebuild 1814 SHA256 c389353b17a201cff52c738ed3a944d162aab931c53ced4d05f56f24dfd98bf2 SHA512 0d30c36568344bf096b88e2e4ce94f59a6d0d978255c3b038be65caf84d7a44457f620b232115e642b53a4ff322065fb107c0ef4fe06305792f42f1b90688a79 WHIRLPOOL 4c81acd8a0b3a08f757e77f64ff6b10b4a6a8959d394c9a8be5f310af8d9e0de4b6613ce039f7fdc7830a477574f2e21b0e849d7f3fae992c3bf44dbc80e9e8d
-EBUILD bioperl-1.6.9.ebuild 1724 SHA256 d6a4584ccafcac82003843808a972bc42033f1638d4829df92b6d36d9febfb9a SHA512 869e89bc823670a37e2a7ffb17de2089b37afb9c1b478da294e52c4de015c693721c389c0c456705b54dea878390fa1b72b1b90d94e52d58e6af50c4c3318144 WHIRLPOOL 72fef40a234eca325b96ced9f5a2b67ad8104ae5a97a73ce1453308c828efb9a8477e2b2d96cbb0877da91046e9f3b10fff6ca134db400be4b45b191e655fdbc
-EBUILD bioperl-9999-r1.ebuild 1952 SHA256 93d7090d8b37371e4fe0653fef3cd02dd5e9eb6dd36c85c18863229566b45a1a SHA512 4281033d4fc7ff7c1eccc333bed2a1f607ad5e6ea80d105bca084e643191fddb7ba97c257dad88516bf70770df163cd5dbdf62ebc2847295f11d4b96e77fc046 WHIRLPOOL 4b2c7772869b29813e2922997b6300efc51d59ed9fd89c6eb92a66a542fe399bdd5880698bcbf7b2be3d6c4d47c3a2bab7b145370731089004a26a34592eec41
-MISC ChangeLog 9310 SHA256 a73cf9066b08ccf65e3b56170ce8a6b9ec5e2a3aed1f0bd6b961e30373990db0 SHA512 4459bc86d496ea79609d4269d38e080c4bca0f374ced283032087736974b476b21391b3453113ae866672f9748b10c6e2d37eafbce2d1a17e2ea1d483dd12690 WHIRLPOOL 212fe8d1b9a0450bde0391ca5f6052c8aafc31030e41719a3e7757a8f0a521dde68c39493c4ed767c7b4e8cb387b6779585d26edb714e5da4a8efd36b9073fa8
-MISC metadata.xml 427 SHA256 7cf29d5c98ef7709f63f887cabe6210ef0fb575e647776bef3c8b4cdf30ec44a SHA512 d32b5b02640e7107d5e574e9decd411d8ace7da1f090d7b825926f690c24c397cfb8b5e639a30481aa096bde72da8d4b52c9f5116c3b524941f35655558d59dc WHIRLPOOL fe2ad3a4efd803bffbe9bc42b95becefa99a3756a27390c5380f69bb5a3b3dd9966cec566ec5ebb0a845087be500ade36ec37da44bafe26f727bb3a0f72353c5
+EBUILD bioperl-1.6.9.ebuild 1775 SHA256 26ea5bfe827dab9f184499b47f4ee36a9471ecd26bcc4260248be909e5f87224 SHA512 4fbbbf2aa873d88bb5e0ce0da6f021b04728eabb8bd787a8af88011ff99bf7da1f3822fed5107cb9758acc479053ab57f6beffedd899a9856714d7eda9fe8847 WHIRLPOOL 9504ce249dd0fa188e56602fc3b15a538f186b82345f108d02a72ed913bb1ed1add2de0d6d180cec922a5fb1d50788ddfad33ade78bc824bb2a44b72392cd407
+EBUILD bioperl-9999-r1.ebuild 1951 SHA256 846d6fc690a4b8b980ee2e76e731fd9947c746f9460ac5aae7403ec3959deaac SHA512 76e96ed370775d52c0046e1d1d5e4bcbadc83baee8c053e93cda243aed85e41b8fe5b0a9ccfb11cacea5ba359d8b4928ea2a3dc7d415511d4c45605887a53ab0 WHIRLPOOL 2ac566fbf3d3ea585ba7a26ede6231bbbd4031d9663c134eebdcc40bb39733766f7cc391cb18dde3b82971bfe291d7abfd12a5fb3691abd12f3cb30f7cd494a2
+MISC ChangeLog 9449 SHA256 08edcb670d62476aa28049ba4fd1973d734f485d25cab72e1ff371f12f7241a7 SHA512 39c09a4eea0830f506e65fc124fc95e10b8c45a9f37185f9f810e27a1023ea41d70e079e8053df38a46c24dbb282b29761d8c48547047f0526df08b1e8c93c40 WHIRLPOOL 8bfe0de75e0bb056a598c8794f44d76f43957fe0da60992d259567f34f29b0e1e48299a604890ff195efc5bff17586ca9e69f1bfd9371477815c3ac29b6dd335
+MISC metadata.xml 440 SHA256 5360673bcd3c5b31e60fc54f1865790aae76e299e82b5e6a41c5e37d026cccaf SHA512 d691277d3ddf5d944c2898440a4ff4ac6649366d81265599f9e0d23ea1db6745f7578112a73f04d1cfb705789ddec754c82b0a9590989f6ef41124e87d57d260 WHIRLPOOL e3a8031ab9b2ab901ce5e3371e6af05d85fced36582f61491a0a7f24e256888bf5a065189a6dba4d7e5f6dbf28d88b7b050a4fe29ae3d5716d15ac4cc74be86b
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2
+Version: GnuPG v2.0
 
-iJwEAQEIAAYFAlPmpeIACgkQG9wOWsQutdbC2gQAl12gwxJvyKToQaGGB3hVQvri
-OzXgIba7OL5BTsrozGEtcSpyBGHqRaHJKgtK5Tk1+W3u5S5LZ8yM5034pbZ+A9B4
-/kto8g3GD12rLtuwc1Rd281hHB88qJSqXlDR5k02kfTw3uu0TdmU73m3mkTJOkfT
-X1+/wTC5mZD7x5XRtQs=
-=GJ22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+=eI2W
 -----END PGP SIGNATURE-----

diff --git a/sci-biology/bioperl/bioperl-1.6.9.ebuild b/sci-biology/bioperl/bioperl-1.6.9.ebuild
index 79bc667d4170420d36bd94f1fbdb2b63c82b2000..954e6b3ddbac7d91cf0293df782e9593339c1e8a 100644 (file)
--- a/sci-biology/bioperl/bioperl-1.6.9.ebuild
+++ b/sci-biology/bioperl/bioperl-1.6.9.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.9.ebuild,v 1.3 2014/08/09 22:46:03 zlogene Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.9.ebuild,v 1.4 2015/04/08 08:03:21 jlec Exp $
 
 EAPI="5"
 
@@ -18,13 +18,16 @@ SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
 
-CDEPEND="dev-perl/libwww-perl
+CDEPEND="
+       dev-perl/libwww-perl
        !minimal? (
                dev-perl/Algorithm-Munkres
                dev-perl/Array-Compare
                dev-perl/yaml
+               dev-perl/Bio-ASN1-EntrezGene
                dev-perl/Clone
                dev-perl/Convert-Binary-C
+               dev-perl/Data-Stag
                dev-perl/GD
                dev-perl/Graph
                >=dev-perl/HTML-Parser-3.60

diff --git a/sci-biology/bioperl/bioperl-9999-r1.ebuild b/sci-biology/bioperl/bioperl-9999-r1.ebuild
index 5c32f1bef1e96f659f935977ea7502520e5705ef..54dcbb4cc10b1029a1a71fbc0eefaa455d85cf32 100644 (file)
--- a/sci-biology/bioperl/bioperl-9999-r1.ebuild
+++ b/sci-biology/bioperl/bioperl-9999-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.3 2014/08/09 22:46:03 zlogene Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-9999-r1.ebuild,v 1.4 2015/04/08 08:03:21 jlec Exp $
 
 EAPI="5"
 
@@ -19,7 +19,8 @@ SLOT="0"
 KEYWORDS=""
 IUSE="-minimal graphviz ${SUBPROJECTS}"
 
-CDEPEND="dev-perl/Data-Stag
+CDEPEND="
+       dev-perl/Data-Stag
        dev-perl/libwww-perl
        !minimal? (
                dev-perl/Ace

diff --git a/sci-biology/bioperl/metadata.xml b/sci-biology/bioperl/metadata.xml
index 571dbcf421eec91a7fc487eaf5a757b1e38dc9b4..210ba364d45f4423e4bbbe008e20f183ccabf91c 100644 (file)
--- a/sci-biology/bioperl/metadata.xml
+++ b/sci-biology/bioperl/metadata.xml
@@ -1,13 +1,13 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-       <herd>sci-biology</herd>
-       <use>
-               <flag name="run">Install sci-biology/bioperl-run</flag>
-               <flag name="network">Install sci-biology/bioperl-run</flag>
-               <flag name="db">Install sci-biology/bioperl-run</flag>
-       </use>
-       <upstream>
-               <remote-id type="cpan">BioPerl</remote-id>
-       </upstream>
+  <herd>sci-biology</herd>
+  <use>
+    <flag name="run">Install sci-biology/bioperl-run</flag>
+    <flag name="network">Install sci-biology/bioperl-run</flag>
+    <flag name="db">Install sci-biology/bioperl-run</flag>
+  </use>
+  <upstream>
+    <remote-id type="cpan">BioPerl</remote-id>
+  </upstream>
 </pkgmetadata>