Moving to sci-biology/primer3

diff --git a/app-sci/emboss/Manifest b/app-sci/emboss/Manifest
index e4a5429d276c5337d5e1920cd31611498e3dbcc3..525cc323471ae23211600f031a7f8e7fb2adf477 100644 (file)
--- a/app-sci/emboss/Manifest
+++ b/app-sci/emboss/Manifest
@@ -1,4 +1,4 @@
-MD5 da2450ccdcbe5b8f8e0b02f615b62851 emboss-2.9.0.ebuild 1751
+MD5 b80224fa1ee4c546562b1dbbaf0dd73c emboss-2.9.0.ebuild 1755
 MD5 1b0826c48804a608a2bb548e7c27dc93 ChangeLog 2789
 MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013
 MD5 68e42b6377bb0887a0aeac76cf530854 files/digest-emboss-2.9.0 66

diff --git a/app-sci/primer3/ChangeLog b/app-sci/primer3/ChangeLog
deleted file mode 100644 (file)
index fce4ff8..0000000
--- a/app-sci/primer3/ChangeLog
+++ /dev/null
@@ -1,26 +0,0 @@
-# ChangeLog for app-sci/primer3
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/primer3/ChangeLog,v 1.5 2004/11/01 01:11:29 ribosome Exp $
-
-  31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -primer3-0.9.ebuild,
-  primer3-1.0.0.ebuild:
-  Removed old version. Added 1.0 to x86. Fixed regression test.
-
-*primer3-1.0.0 (10 Aug 2004)
-
-  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org>
-  primer3-0.9.ebuild:
-  Added to x86.
-  primer3-1.0.0.ebuild:
-  Updated package. Added regression test support.
-
-  24 Jun 2004; David Holm <dholm@gentoo.org> primer3-0.9.ebuild:
-  Added to ~ppc.
-
-*primer3-0.9 (23 Jun 2004)
-
-  23 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
-  primer3-0.9.ebuild, metadata.xml :
-  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
-  Reference: Gentoo Bugzilla, bug #54036
-

diff --git a/app-sci/primer3/Manifest b/app-sci/primer3/Manifest
deleted file mode 100644 (file)
index 39aea17..0000000
--- a/app-sci/primer3/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 3dfcbfa98dcdf0382e9e6657be56eab3 primer3-1.0.0.ebuild 701
-MD5 8d47023a5fd0eb0143352ba613597cd6 ChangeLog 885
-MD5 a3a36dab6877af45d7b14ec9edea31d9 metadata.xml 713
-MD5 fc13dfb772f9bdd09bc788514faa4abe files/digest-primer3-1.0.0 65

diff --git a/app-sci/primer3/files/digest-primer3-1.0.0 b/app-sci/primer3/files/digest-primer3-1.0.0
deleted file mode 100644 (file)
index e6dbc9a..0000000
--- a/app-sci/primer3/files/digest-primer3-1.0.0
+++ /dev/null
@@ -1 +0,0 @@
-MD5 58605ee607f6218a2a775345b10d15fa primer3_1.0.0.tar.gz 936696

diff --git a/app-sci/primer3/metadata.xml b/app-sci/primer3/metadata.xml
deleted file mode 100644 (file)
index c4e1042..0000000
--- a/app-sci/primer3/metadata.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-       <maintainer>
-               <email>ribosome@gentoo.org</email>
-               <name>Olivier Fisette</name>
-       </maintainer>
-       <herd>sci</herd>
-       <longdescription>
-               Primer3 picks primers for PCR reactions, considering: oligonucleotide
-               melting temperature, size, GC content, and primer-dimer possibilities;
-               PCR product size; positional constraints within the source sequence;
-               and miscellaneous other constraints. All of these criteria are
-               user-specifiable as constraints, and some are specifiable as terms in
-               an objective function that characterizes an optimal primer pair.
-       </longdescription>
-</pkgmetadata>

diff --git a/app-sci/primer3/primer3-1.0.0.ebuild b/app-sci/primer3/primer3-1.0.0.ebuild
deleted file mode 100644 (file)
index c0b9146..0000000
--- a/app-sci/primer3/primer3-1.0.0.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/primer3/primer3-1.0.0.ebuild,v 1.2 2004/11/01 01:11:29 ribosome Exp $
-
-DESCRIPTION="Design primers for PCR reactions."
-HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html"
-SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz"
-LICENSE="whitehead"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE=""
-
-RDEPEND=""
-
-DEPEND="dev-lang/perl"
-
-S=${WORKDIR}/${PN}_${PV}/src
-
-src_compile() {
-       emake -e || die
-}
-
-src_test () {
-       cd ../test
-       perl primer_test.pl primer3_core || die
-}
-
-src_install () {
-       dobin primer3_core
-       dodoc release_notes ../README ../example
-}