# ChangeLog for app-sci/embassy-domainatrix
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-domainatrix/ChangeLog,v 1.2 2004/07/21 07:43:36 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-domainatrix/ChangeLog,v 1.3 2004/11/01 01:34:57 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
+ embassy-domainatrix-1.0.0.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-domainatrix-1.0.0.ebuild:
Added to ~ppc.
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-domainatrix/embassy-domainatrix-1.0.0.ebuild,v 1.2 2004/07/21 07:43:36 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-domainatrix/embassy-domainatrix-1.0.0.ebuild,v 1.3 2004/11/01 01:34:57 ribosome Exp $
inherit embassy
DESCRIPTION="Protein 3D analysis add-on package for EMBOSS"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
# ChangeLog for app-sci/embassy-emnu
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-emnu/ChangeLog,v 1.2 2004/07/21 07:41:33 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-emnu/ChangeLog,v 1.3 2004/11/01 01:33:10 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> embassy-emnu-1.05.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-emnu-1.05.ebuild:
Added to ~ppc.
-MD5 813b3d74d9633fd2fbe2cd5016b328a6 ChangeLog 459
-MD5 86611803ae0fa480ef5f7aa0766dbfb8 embassy-emnu-1.05.ebuild 419
+MD5 80e563c2df1fbe8d01b84f3d3b426db5 embassy-emnu-1.05.ebuild 418
+MD5 4b20170107145aa4ef472d2c9b79f3f4 ChangeLog 555
MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
MD5 8c98ad2b52c276086d21f0ebe1e261f1 files/digest-embassy-emnu-1.05 127
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-emnu/embassy-emnu-1.05.ebuild,v 1.2 2004/07/21 07:41:33 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-emnu/embassy-emnu-1.05.ebuild,v 1.3 2004/11/01 01:33:10 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
RDEPEND="sys-libs/ncurses
${RDEPEND}"
# ChangeLog for app-sci/embassy-esim4
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-esim4/ChangeLog,v 1.2 2004/07/21 07:40:03 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-esim4/ChangeLog,v 1.3 2004/11/01 01:36:52 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
+ embassy-esim4-1.0.0.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-esim4-1.0.0.ebuild:
Added to ~ppc.
-MD5 da72d1735097f12677d1b8d5233ef51a ChangeLog 467
-MD5 0de9004a8c2297910d5b16b533f852ed embassy-esim4-1.0.0.ebuild 353
+MD5 a590fafa1dda8001287ef59586ac82f5 embassy-esim4-1.0.0.ebuild 352
+MD5 27e4f0fbc0d0241209387636201980f7 ChangeLog 567
MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
MD5 b87bf359afdf01a0ebe6eb9454ee5ff0 files/digest-embassy-esim4-1.0.0 129
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-esim4/embassy-esim4-1.0.0.ebuild,v 1.2 2004/07/21 07:40:03 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-esim4/embassy-esim4-1.0.0.ebuild,v 1.3 2004/11/01 01:36:52 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
# ChangeLog for app-sci/embassy-hmmer
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-hmmer/ChangeLog,v 1.2 2004/07/21 07:40:05 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-hmmer/ChangeLog,v 1.3 2004/11/01 01:38:26 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
+ embassy-hmmer-2.1.1.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-hmmer-2.1.1.ebuild:
Added to ~ppc.
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-hmmer/embassy-hmmer-2.1.1.ebuild,v 1.2 2004/07/21 07:40:05 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-hmmer/embassy-hmmer-2.1.1.ebuild,v 1.3 2004/11/01 01:38:26 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
src_install() {
embassy_src_install
# ChangeLog for app-sci/embassy-meme
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-meme/ChangeLog,v 1.2 2004/07/21 07:39:07 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-meme/ChangeLog,v 1.3 2004/11/01 01:40:07 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> embassy-meme-2.3.1.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-meme-2.3.1.ebuild:
Added to ~ppc.
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-meme/embassy-meme-2.3.1.ebuild,v 1.2 2004/07/21 07:39:07 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-meme/embassy-meme-2.3.1.ebuild,v 1.3 2004/11/01 01:40:07 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
src_install() {
embassy_src_install
# ChangeLog for app-sci/embassy-mse
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-mse/ChangeLog,v 1.2 2004/07/21 07:37:10 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-mse/ChangeLog,v 1.3 2004/11/01 01:41:53 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> embassy-mse-1.0.0.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-mse-1.0.0.ebuild:
Added to ~ppc.
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-mse/embassy-mse-1.0.0.ebuild,v 1.2 2004/07/21 07:37:10 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-mse/embassy-mse-1.0.0.ebuild,v 1.3 2004/11/01 01:41:53 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Editor"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
src_install() {
embassy_src_install
# ChangeLog for app-sci/embassy-phylip
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-phylip/ChangeLog,v 1.2 2004/07/21 07:37:02 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-phylip/ChangeLog,v 1.3 2004/11/01 01:43:16 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org>
+ embassy-phylip-3.57c.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-phylip-3.57c.ebuild:
Added to ~ppc.
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-phylip/embassy-phylip-3.57c.ebuild,v 1.2 2004/07/21 07:37:02 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-phylip/embassy-phylip-3.57c.ebuild,v 1.3 2004/11/01 01:43:16 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS integrated version of the PHYLogeny Inference Package"
LICENSE="freedist"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
# ChangeLog for app-sci/embassy-topo
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-topo/ChangeLog,v 1.2 2004/07/21 07:33:47 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-topo/ChangeLog,v 1.3 2004/11/01 01:44:40 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> embassy-topo-1.0.0.ebuild:
+ Added to x86.
21 Jul 2004; David Holm <dholm@gentoo.org> embassy-topo-1.0.0.ebuild:
Added to ~ppc.
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-topo/embassy-topo-1.0.0.ebuild,v 1.2 2004/07/21 07:33:47 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy-topo/embassy-topo-1.0.0.ebuild,v 1.3 2004/11/01 01:44:40 ribosome Exp $
inherit embassy
DESCRIPTION="EMBOSS integrated version of TOPO - Transmembrane protein display"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
# ChangeLog for app-sci/embassy
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy/ChangeLog,v 1.3 2004/09/04 17:06:51 axxo Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy/ChangeLog,v 1.4 2004/11/01 01:47:03 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> embassy-2.9.0.ebuild:
+ Added to x86.
04 Sep 2004; Thomas Matthijs <axxo@gentoo.org> embassy-2.9.0.ebuild:
fix depend syntax 58347
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy/embassy-2.9.0.ebuild,v 1.3 2004/09/04 17:06:51 axxo Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/embassy/embassy-2.9.0.ebuild,v 1.4 2004/11/01 01:47:03 ribosome Exp $
DESCRIPTION="A meta-package for installing all EMBASSY packages (EMBOSS add-ons)"
HOMEPAGE="http://www.emboss.org/"
LICENSE="GPL-2 freedist"
SLOT="0"
-KEYWORDS="~x86 ~ppc"
+KEYWORDS="x86 ~ppc"
IUSE=""
# IUSE="no-conflict"
# ChangeLog for app-sci/gibbs
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gibbs/ChangeLog,v 1.4 2004/07/01 19:38:47 eradicator Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/gibbs/ChangeLog,v 1.5 2004/11/01 01:50:38 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> gibbs-1995.9.ebuild:
+ Added to x86.
01 Jul 2004; Jeremy Huddleston <eradicator@gentoo.org> gibbs-1995.9.ebuild:
virtual/glibc -> virtual/libc
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gibbs/gibbs-1995.9.ebuild,v 1.3 2004/07/01 11:52:06 eradicator Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/gibbs/gibbs-1995.9.ebuild,v 1.4 2004/11/01 01:50:38 ribosome Exp $
DESCRIPTION="A Gibbs sampling algorithm for local alignment of subtle sequence signals in multiple protein sequences."
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~x86"
+KEYWORDS="x86"
IUSE=""
DEPEND="virtual/libc"
# ChangeLog for app-sci/hmmer
# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/ChangeLog,v 1.7 2004/10/17 09:43:01 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/ChangeLog,v 1.8 2004/11/01 01:53:06 ribosome Exp $
+
+ 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -hmmer-2.3.1.ebuild,
+ hmmer-2.3.2.ebuild:
+ Added 2.3.2 to x86. Removed old version.
17 Oct 2004; David Holm <dholm@gentoo.org> hmmer-2.3.2.ebuild:
Added to ~ppc.
+++ /dev/null
-MD5 c724413e5761c630892506698a4716e2 hmmer-2.3.1.tar.gz 1023122
+++ /dev/null
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/hmmer-2.3.1.ebuild,v 1.5 2004/07/14 01:51:03 agriffis Exp $
-
-DESCRIPTION="HMMER - Biological sequence analysis with profile HMMs"
-HOMEPAGE="http://hmmer.wustl.edu/"
-SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/2.3.1/hmmer-2.3.1.tar.gz"
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="x86"
-IUSE=""
-
-
-src_compile() {
- ./configure \
- --host=${CHOST} \
- --prefix=${D}/usr \
- --exec_prefix=${D}/usr \
- --mandir=${D}/usr/share/man || die "./configure failed"
-
-# econf || die
- emake || die
-}
-
-src_install() {
-
- dodir usr/bin
- dodir usr/share/man/man1
-
- einstall || die
-
- dodoc 00README COPYRIGHT INSTALL LICENSE NOTES Userguide.pdf
-
- cd squid
-
- dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
-
-}
# Copyright 1999-2004 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/hmmer-2.3.2.ebuild,v 1.3 2004/10/17 09:43:01 dholm Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/hmmer-2.3.2.ebuild,v 1.4 2004/11/01 01:53:06 ribosome Exp $
DESCRIPTION="HMMER - Biological sequence analysis with profile HMMs"
HOMEPAGE="http://hmmer.wustl.edu/"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS="~x86 ~ppc-macos ~ppc"
+KEYWORDS="x86 ~ppc-macos ~ppc"
IUSE=""
src_compile() {