+++ /dev/null
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-EANT_BUILD_TARGET="dist"
-EANT_NEEDS_TOOLS="true"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-
-inherit git-2 java-pkg-2 java-ant-2
-
-DESCRIPTION="The Genome Analysis Toolkit"
-HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/broadgsa/gatk.git"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS=""
-
-COMMON_DEPS=""
-DEPEND="
- >=virtual/jdk-1.6
- dev-vcs/git
- ${COMMON_DEPS}"
-RDEPEND="
- >=virtual/jre-1.6
- ${COMMON_DEPS}"
-
-src_prepare() {
- sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die
- java-pkg-2_src_prepare
-}
-
-src_install() {
- java-pkg_dojar dist/*.jar
- java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar
- java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar
-}