Initial import (bug #112769)

Package-Manager: portage-2.0.51.22-r3

diff --git a/sci-biology/clustalw-mpi/ChangeLog b/sci-biology/clustalw-mpi/ChangeLog
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+++ b/sci-biology/clustalw-mpi/ChangeLog
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+# ChangeLog for sci-biology/clustalw-mpi
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/ChangeLog,v 1.1 2005/11/19 17:24:29 ribosome Exp $
+
+*clustalw-mpi-0.13 (19 Nov 2005)
+
+  19 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +clustalw-mpi-0.13.ebuild:
+  Initial import. Original ebuild submitted by Brady Catherman
+  <bradyc@uidaho.edu> (bug #112769).
+

diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest
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+++ b/sci-biology/clustalw-mpi/Manifest
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+MD5 b2979bdb6fa42ce8476d8d79de24073a ChangeLog 455
+MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+MD5 17457e727b32681ca5fb606196e17376 clustalw-mpi-0.13.ebuild 1225
+MD5 a3271acbd5ef3270f2823a55c22dc7cc files/digest-clustalw-mpi-0.13 69

diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild
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+++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild
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+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild,v 1.1 2005/11/19 17:24:29 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment program"
+LICENSE="public-domain"
+HOMEPAGE="http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/"
+SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
+
+SLOT="0"
+IUSE="mpi_njtree static_pairalign"
+KEYWORDS="~x86"
+
+DEPEND="virtual/libc
+       virtual/mpi"
+
+src_unpack() {
+       unpack ${A}
+       cd "${S}"
+       sed -e "s/CFLAGS  = -c -O3/CFLAGS = -c ${CFLAGS}/" \
+               -e "s/LFLAGS    = -lm/LFLAGS = -lm ${CFLAGS}/" -i Makefile || \
+                       die "Failed to apply CFLAGS."
+       if use mpi_njtree; then
+               sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \
+                       die "Failed to configure MPI code for NJ trees."
+       fi
+       if use static_pairalign; then
+               sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \
+                       die "Failed to configure static scheduling for pair alignments."
+       fi
+}
+
+src_compile() {
+       emake || die
+}
+
+src_install() {
+       dobin clustalw-mpi || die
+       newdoc README.${PN} README || die
+}

diff --git a/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13
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+++ b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13
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+MD5 f4c24336764eff6be73322bfc7167f16 clustalw-mpi-0.13.tar.gz 154911

diff --git a/sci-biology/clustalw-mpi/metadata.xml b/sci-biology/clustalw-mpi/metadata.xml
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+++ b/sci-biology/clustalw-mpi/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+       <maintainer>
+               <email>ribosome@gentoo.org</email>
+               <name>Olivier Fisette</name>
+       </maintainer>
+       <herd>sci</herd>
+</pkgmetadata>