+++ /dev/null
-DIST astroscrappy-1.0.3.tar.gz 422209 BLAKE2B f0d5a83c6b4718eb6d0a1d60068459da3d886c6ab389be5b65a6b31dfb2bcfff9238e8773d1cfeca8db15289999ccbdcf96ba966f85ca76779077ee6fd0923a6 SHA512 2e96e8e62f81c770802a3c7699ca4455c640bb000aa4bffc22149745eed4e7e33cc4b297649020a601ff7fb242c0545cf9391c19ee2687adab26ac494d37dbb2
-DIST astroscrappy-1.0.5.tar.gz 421910 BLAKE2B 7ca92277e3914b54cce09cb9a5d8e4657dbc2e3aead8904c967be906bdf78d4b73450adff7d7b970ec37e7b4ba5ab275f2c1cdd8b4573b1563daed6ecae14682 SHA512 bad648140abe3032aa76f43b4c61a15bc49b825bb8333d0e2dc6ba244542e5d6b283824336de82c73aefdfd62b952c9089c3237c913faf17874af13725345064
+++ /dev/null
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_5} )
-
-inherit distutils-r1 toolchain-funcs flag-o-matic
-
-DESCRIPTION="Optimized cosmic ray annihilation astropy python module"
-HOMEPAGE="https://github.com/astropy/astroscrappy"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE="doc openmp test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- dev-python/astropy[${PYTHON_USEDEP}]
- dev-python/astropy-helpers[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]"
-
-DEPEND="${RDEPEND}
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
- test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
-
-PATCHES=(
- "${FILESDIR}/${P}-dont-install-binary.patch"
- "${FILESDIR}/${P}-endian-fix-tests.patch"
- "${FILESDIR}/${P}-numpy-fix-tests.patch"
- "${FILESDIR}/${P}-respect-user-flag.patch"
-)
-
-DOCS=( CHANGES.rst )
-
-python_prepare_all() {
- sed -i -e '/auto_use/s/True/False/' setup.cfg || die
- use openmp && tc-has-openmp && append-flags -fopenmp
- distutils-r1_python_prepare_all
-}
-
-python_compile_all() {
- use doc && esetup.py build_sphinx
-}
-
-python_test() {
- esetup.py test
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( docs/_build/html/. )
- distutils-r1_python_install_all
-}
+++ /dev/null
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_5,3_6} )
-
-inherit distutils-r1
-
-DESCRIPTION="Optimized cosmic ray annihilation astropy python module"
-HOMEPAGE="https://github.com/astropy/astroscrappy"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE="doc openmp test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- dev-python/astropy[${PYTHON_USEDEP}]
- dev-python/astropy-helpers[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]"
-
-DEPEND="${RDEPEND}
- dev-python/cython[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
- test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
-
-DOCS=( CHANGES.rst )
-
-PATCHES=(
- "${FILESDIR}/${PN}-1.0.5-respect-user-flag.patch"
-)
-
-python_prepare_all() {
- # use astropy-helpers from system
- sed -i -e '/auto_use/s/True/False/' setup.cfg || die
- # if the user explicitely does not want openmp, do not forcefully use it
- if ! use openmp; then
- sed -e 's/if has_openmp/if False/' \
- -i astroscrappy/utils/setup_package.py || die
- fi
- distutils-r1_python_prepare_all
-}
-
-python_compile_all() {
- use doc && esetup.py build_sphinx
-}
-
-python_test() {
- esetup.py test
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( docs/_build/html/. )
- distutils-r1_python_install_all
-}
+++ /dev/null
-Author: Ole Streicher <olebole@debian.org>
-Description: Don't install example/template binary
---- a/setup.py
-+++ b/setup.py
-@@ -80,9 +80,6 @@
-
- # Define entry points for command-line scripts
- entry_points = {}
--entry_points['console_scripts'] = [
-- 'astropy-package-template-example = packagename.example_mod:main',
--]
-
- # Include all .c files, recursively, including those generated by
- # Cython, since we can not do this in MANIFEST.in with a "dynamic"
+++ /dev/null
-From 5b5ce99c63d03e60b6027f09f72231db11a87bf2 Mon Sep 17 00:00:00 2001
-From: Curtis McCully <cmccully@lcogt.net>
-Date: Thu, 3 Dec 2015 12:02:38 -0800
-Subject: [PATCH] Made tests not endian specific.
---- a/astroscrappy/tests/test_utils.py
-+++ b/astroscrappy/tests/test_utils.py
-@@ -56,7 +56,7 @@
-
-
- def test_medfilt5():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npmed5 = ndimage.filters.median_filter(a, size=(5, 5), mode='nearest')
- npmed5[:2, :] = a[:2, :]
- npmed5[-2:, :] = a[-2:, :]
-@@ -68,7 +68,7 @@
-
-
- def test_medfilt7():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npmed7 = ndimage.filters.median_filter(a, size=(7, 7), mode='nearest')
- npmed7[:3, :] = a[:3, :]
- npmed7[-3:, :] = a[-3:, :]
-@@ -80,7 +80,7 @@
-
-
- def test_sepmedfilt3():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npmed3 = ndimage.filters.median_filter(a, size=(1, 3), mode='nearest')
- npmed3[:, :1] = a[:, :1]
- npmed3[:, -1:] = a[:, -1:]
-@@ -95,7 +95,7 @@
-
-
- def test_sepmedfilt5():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npmed5 = ndimage.filters.median_filter(a, size=(1, 5), mode='nearest')
- npmed5[:, :2] = a[:, :2]
- npmed5[:, -2:] = a[:, -2:]
-@@ -110,7 +110,7 @@
-
-
- def test_sepmedfilt7():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npmed7 = ndimage.filters.median_filter(a, size=(1, 7), mode='nearest')
- npmed7[:, :3] = a[:, :3]
- npmed7[:, -3:] = a[:, -3:]
-@@ -125,7 +125,7 @@
-
-
- def test_sepmedfilt9():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npmed9 = ndimage.filters.median_filter(a, size=(1, 9), mode='nearest')
- npmed9[:, :4] = a[:, :4]
- npmed9[:, -4:] = a[:, -4:]
-@@ -174,7 +174,7 @@
-
-
- def test_subsample():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- npsubsamp = np.zeros((a.shape[0] * 2, a.shape[1] * 2), dtype=np.float32)
- for i in range(a.shape[0]):
- for j in range(a.shape[1]):
-@@ -189,8 +189,8 @@
-
- def test_rebin():
- a = np.ascontiguousarray(np.random.random((2002, 2002)), dtype=np.float32)
-- a = a.astype('<f4')
-- nprebin = np.zeros((1001, 1001), dtype=np.float32).astype('<f4')
-+ a = a.astype('f4')
-+ nprebin = np.zeros((1001, 1001), dtype=np.float32).astype('f4')
- for i in range(1001):
- for j in range(1001):
- nprebin[i, j] = (a[2 * i, 2 * j] + a[2 * i + 1, 2 * j] +
-@@ -202,7 +202,7 @@
-
-
- def test_laplaceconvolve():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
- k = np.array([[0.0, -1.0, 0.0], [-1.0, 4.0, -1.0], [0.0, -1.0, 0.0]])
- k = k.astype('<f4')
- npconv = ndimage.filters.convolve(a, k, mode='constant', cval=0.0)
-@@ -211,8 +211,8 @@
-
-
- def test_convolve():
-- a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('<f4')
-- k = np.ascontiguousarray(np.random.random((5, 5))).astype('<f4')
-+ a = np.ascontiguousarray(np.random.random((1001, 1001))).astype('f4')
-+ k = np.ascontiguousarray(np.random.random((5, 5))).astype('f4')
- npconv = ndimage.filters.convolve(a, k, mode='constant', cval=0.0)
- cconv = convolve(a, k)
- assert_allclose(cconv, npconv, rtol=0, atol=1e-5)
+++ /dev/null
-Author: Ole Streicher <olebole@debian.org>
-Description: Cast the numpy arrays in the test to the same data type
-Bug: https://ci.debian.net/data/packages/unstable/amd64/a/astroscrappy/20160112_151253.autopkgtest.log.gz
---- a/astroscrappy/tests/test_astroscrappy.py
-+++ b/astroscrappy/tests/test_astroscrappy.py
-@@ -36,7 +36,7 @@
- imdata += gaussian(imdata.shape, x, y, brightness, 3.5)
-
- # Add the poisson noise
--imdata = np.random.poisson(imdata)
-+imdata = np.float32(np.random.poisson(imdata))
-
- # Add readnoise
- imdata += np.random.normal(0.0, 10.0, size=(1001, 1001))
-@@ -60,4 +60,4 @@
- # contrast that we can turn our detection threshold up.
- mask, _clean = detect_cosmics(imdata, readnoise=10., gain=1.0,
- sigclip=6, sigfrac=1.0)
-- assert (mask == expected_crmask).sum() == (1001 * 1001)
-\ No newline at end of file
-+ assert (mask == expected_crmask).sum() == (1001 * 1001)
+++ /dev/null
---- astroscrappy/astroscrappy/utils/setup_package.py.orig 2016-03-09 22:50:34.304043122 +0000
-+++ astroscrappy/astroscrappy/utils/setup_package.py 2016-03-09 22:54:53.560783823 +0000
-@@ -43,30 +43,11 @@
- sources=med_sources,
- include_dirs=include_dirs,
- libraries=libraries,
-- language="c",
-- extra_compile_args=['-g', '-O3', '-funroll-loops',
-- '-ffast-math'])
-+ language="c")
- ext_im = Extension(name=str("astroscrappy.utils.image_utils"),
- sources=im_sources,
- include_dirs=include_dirs,
- libraries=libraries,
-- language="c",
-- extra_compile_args=['-g', '-O3', '-funroll-loops',
-- '-ffast-math'])
--
-- has_openmp, outputs = check_openmp()
-- if has_openmp:
-- ext_med.extra_compile_args.append('-fopenmp')
-- ext_im.extra_compile_args.append('-fopenmp')
-- ext_med.extra_link_args = ['-g', '-fopenmp']
-- ext_im.extra_link_args = ['-g', '-fopenmp']
-- else:
-- log.warn('OpenMP was not found. '
-- 'astroscrappy will be compiled without OpenMP. '
-- '(Use the "-v" option of setup.py for more details.)')
-- log.debug(('(Start of OpenMP info)\n'
-- 'compiler stdout:\n{0}\n'
-- 'compiler stderr:\n{1}\n'
-- '(End of OpenMP info)').format(*outputs))
-+ language="c")
-
- return [ext_med, ext_im]
+++ /dev/null
-From f3acf99e65f58e2ee2f409d33f44a3abb1ba90c4 Mon Sep 17 00:00:00 2001
-From: Sébastien Fabbro <bicatali@gentoo.org>
-Date: Wed, 31 Aug 2016 22:19:12 +0000
-Subject: [PATCH] respect user compiling flags Depending on compilers, -O3
- -funroll-loops is not the fastest.
-
----
- astroscrappy/utils/setup_package.py | 8 ++------
- 1 file changed, 2 insertions(+), 6 deletions(-)
-
-diff --git a/astroscrappy/utils/setup_package.py b/astroscrappy/utils/setup_package.py
-index 3e1fba2..c271613 100644
---- a/astroscrappy/utils/setup_package.py
-+++ b/astroscrappy/utils/setup_package.py
-@@ -73,16 +73,12 @@ def get_extensions():
- sources=med_sources,
- include_dirs=include_dirs,
- libraries=libraries,
-- language="c",
-- extra_compile_args=['-g', '-O3', '-funroll-loops',
-- '-ffast-math'])
-+ language="c")
- ext_im = Extension(name=str("astroscrappy.utils.image_utils"),
- sources=im_sources,
- include_dirs=include_dirs,
- libraries=libraries,
-- language="c",
-- extra_compile_args=['-g', '-O3', '-funroll-loops',
-- '-ffast-math'])
-+ language="c")
-
- has_openmp, outputs = check_openmp()
- if has_openmp:
---
-2.9.3
-
+++ /dev/null
-<?xml version='1.0' encoding='UTF-8'?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-astronomy@gentoo.org</email>
- <name>Gentoo Astronomy Project</name>
- </maintainer>
- <longdescription lang="en">
- Astro-SCRAPPY is designed to detect cosmic rays in images (numpy arrays),
- based on Pieter van Dokkum's L.A.Cosmic algorithm. Parallelization is
- achieved using OpenMP.
- </longdescription>
- <upstream>
- <remote-id type="pypi">astroscrappy</remote-id>
- <remote-id type="github">astropy/astroscrappy</remote-id>
- </upstream>
-</pkgmetadata>
projects / gentoo.git / commitdiff