(#119142) Make Java frontend work (Josh Nichols).

Package-Manager: portage-2.1.1_pre1-r1

diff --git a/sci-chemistry/tinker/ChangeLog b/sci-chemistry/tinker/ChangeLog
index 6245baf03c88bbd78921dfc06accaa25b1db5989..2adda0e4f758ecb671e6a5fcaf4a8f3b6fc59749 100644 (file)
--- a/sci-chemistry/tinker/ChangeLog
+++ b/sci-chemistry/tinker/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/tinker
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.3 2006/06/21 06:55:41 spyderous Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/ChangeLog,v 1.4 2006/06/21 14:17:21 spyderous Exp $
+
+*tinker-4.2-r1 (21 Jun 2006)
+
+  21 Jun 2006; Donnie Berkholz <spyderous@gentoo.org>; -tinker-4.2.ebuild,
+  +tinker-4.2-r1.ebuild:
+  (#119142) Make Java frontend work (Josh Nichols).
 
   21 Jun 2006; Donnie Berkholz <spyderous@gentoo.org>; tinker-4.2.ebuild:
   Port to gcc4.

diff --git a/sci-chemistry/tinker/files/digest-tinker-4.2-r1 b/sci-chemistry/tinker/files/digest-tinker-4.2-r1
new file mode 100644 (file)
index 0000000..a38c184
--- /dev/null
+++ b/sci-chemistry/tinker/files/digest-tinker-4.2-r1
@@ -0,0 +1,3 @@
+MD5 5618d8a373896f00e452b137200223fd tinker.tar.gz 8177555
+RMD160 95f904f03f6a1767bbf73b00f326d19a164b7a1c tinker.tar.gz 8177555
+SHA256 ad0cc9782dabdb0cce490fe26508761a36078e741f019090cbaa3e6cacf71055 tinker.tar.gz 8177555

diff --git a/sci-chemistry/tinker/tinker-4.2-r1.ebuild b/sci-chemistry/tinker/tinker-4.2-r1.ebuild
new file mode 100644 (file)
index 0000000..e2048a8
--- /dev/null
+++ b/sci-chemistry/tinker/tinker-4.2-r1.ebuild
@@ -0,0 +1,132 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/tinker-4.2-r1.ebuild,v 1.1 2006/06/21 14:17:21 spyderous Exp $
+
+inherit fortran toolchain-funcs
+
+FORTRAN="g77 gfortran ifc"
+
+DESCRIPTION="TINKER is a molecular modeling package that includes force fields for handing large molecules and large systems, such as AMBER and CHARMM.  A Java based visualization front end is included."
+HOMEPAGE="http://dasher.wustl.edu/tinker/"
+SRC_URI="ftp://dasher.wustl.edu/pub/tinker.tar.gz"
+IUSE="X"
+LICENSE="Tinker"
+SLOT="0"
+KEYWORDS="~x86"
+
+DEPEND="X? (
+                       || ( dev-java/blackdown-java3d-bin
+                       dev-java/sun-java3d-bin )
+               )"
+S="${WORKDIR}/tinker/source"
+
+src_compile() {
+       if use X; then
+               COMPGUI="./compgui.make"
+               LINK="./linkgui.make"
+               if use ppc-macos; then
+                       cp ../jar/macosx/sockets.c .
+               else
+                       cp ../jar/linux/sockets.c .
+               fi
+       else
+               LINK="./link.make"
+       fi
+
+       COMPILE="./compile.make"
+       LIBRARY="./library.make"
+
+       # Need to make sure all of the appropriate config files are in place
+       # for the build.
+       # This should be easily customizable for other Fortran compilers, e.g. pg77.
+       if use ppc-macos; then
+               cp ../apple/gnu/* .
+       elif [ "${FORTRANC}" = "ifc" ]; then
+               cp ../linux/intel/* .
+       else
+               cp ../linux/gnu/* .
+       fi
+
+       cp ../make/* .
+
+       # Prep build scripts
+       if use X; then
+               sed -i \
+                       -e "s:-O3:${CFLAGS}:" \
+                       -e "s:gcc:$(tc-getCC):" \
+                       ${COMPGUI}
+               local JAVA_HOME=$(java-config --jdk-home)
+               local JAVA_LIB_PATH="${JAVA_HOME}/jre/lib/i386/client"
+               ln -s ${JAVA_LIB_PATH}/libjvm.so
+               sed -i -e "s:/local/java/j2sdk1.4.2_05:${JAVA_HOME}:g" ${COMPGUI}
+               sed -i -e "s:g77:${FORTRANC}:g" ${LINK}
+       fi
+       # Default to -O2 if FFLAGS is unset
+       sed -i -e "s:-O3 -ffast-math:${FFLAGS:- -O2}:" ${COMPILE}
+       sed -i -e "s:g77:${FORTRANC}:g" ${COMPILE}
+
+       # Prep executable script - the one packaged with the distro is b0rked
+       if use X; then
+               echo 'java -Djava.library.path=$(java-config -i blackdown-java3d-bin) -cp $(java-config -p blackdown-java3d-bin):/usr/lib/tinker/ffe.jar ffe.Main' > tinker
+       fi
+
+       einfo "Compiling ..."
+       if use X; then
+               ${COMPGUI} || die "GUI compile failed"
+       fi
+       ${COMPILE} || die "compile failed"
+       einfo "Building libraries ..."
+       ${LIBRARY} || die "library creation failed"
+       einfo "Linking ..."
+       ${LINK} || die "link failed"
+}
+
+src_install() {
+       exeinto /usr/bin
+
+       dodoc \
+               ${WORKDIR}/tinker/doc/*.txt \
+               ${WORKDIR}/tinker/doc/release-4.2 \
+               ${WORKDIR}/tinker/doc/*.pdf
+
+       if use X; then
+               if use ppc-macos; then
+                       dolib.so ${WORKDIR}/tinker/jar/macosx/libffe.jnilib
+               else
+                       dolib.so ${WORKDIR}/tinker/jar/linux/libffe.so
+               fi
+       fi
+
+       dolib.a libtinker.a
+
+       insinto /usr/lib/tinker
+       if use X; then
+               doins ${WORKDIR}/tinker/jar/ffe.jar
+       fi
+
+       for EXE in *.x; do
+               newexe ${EXE} ${EXE%.x}
+       done
+
+       if use X; then
+               doexe tinker
+       fi
+
+       docinto example
+       dodoc ${WORKDIR}/tinker/example/*
+       docinto test
+       dodoc ${WORKDIR}/tinker/test/*
+
+       doexe ${WORKDIR}/tinker/perl/mdavg
+
+       insinto /usr/share/tinker/params
+       doins ${WORKDIR}/tinker/params/*
+}
+
+pkg_postinst() {
+       einfo "Tinker binaries installed to ${ROOT}usr/bin."
+       einfo "Parameter files installed to ${ROOT}usr/share/tinker/params."
+       einfo "Call the Java X front-end, Force-Field Explorer, with 'tinker.'"
+       einfo "It doesn't seem to detect installed Java3D yet, fixes welcome."
+       einfo "You must edit ${ROOT}usr/bin/tinker if you aren't using Blackdown."
+}