New upstream version

Package-Manager: portage-2.1.1

diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog
index 695269764e3e7bddff69ac8e0b83cc68c8fa441e..1e0abe58cc0440dbef7c29cb07c54ac281024485 100644 (file)
--- a/sci-biology/prosite/ChangeLog
+++ b/sci-biology/prosite/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/prosite
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.83 2006/09/29 13:57:35 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.84 2006/10/08 01:55:06 ribosome Exp $
+
+*prosite-19.36 (08 Oct 2006)
+
+  08 Oct 2006; Olivier Fisette <ribosome@gentoo.org> +prosite-19.36.ebuild:
+  New upstream version.
 
 *prosite-19.35 (29 Sep 2006)
 

diff --git a/sci-biology/prosite/files/digest-prosite-19.36 b/sci-biology/prosite/files/digest-prosite-19.36
new file mode 100644 (file)
index 0000000..0ce9172
--- /dev/null
+++ b/sci-biology/prosite/files/digest-prosite-19.36
@@ -0,0 +1,3 @@
+MD5 f5db0b1ff9444cb1d81db38ddd641871 prosite-19.36.tar.bz2 4462981
+RMD160 4d80651193b4c34bfdf42b770d4ec07927666057 prosite-19.36.tar.bz2 4462981
+SHA256 6f923d4794f50c8e68d030d01cb6675579007cc04c197d811886dfb4ae853607 prosite-19.36.tar.bz2 4462981

diff --git a/sci-biology/prosite/prosite-19.36.ebuild b/sci-biology/prosite/prosite-19.36.ebuild
new file mode 100644 (file)
index 0000000..bdf81a6
--- /dev/null
+++ b/sci-biology/prosite/prosite-19.36.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-19.36.ebuild,v 1.1 2006/10/08 01:55:06 ribosome Exp $
+
+DESCRIPTION="A protein families and domains database"
+LICENSE="swiss-prot"
+HOMEPAGE="http://ca.expasy.org/prosite"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0 )"
+
+src_compile() {
+       if use emboss; then
+               mkdir PROSITE
+               echo
+               einfo "Indexing PROSITE for usage with EMBOSS."
+               EMBOSS_DATA="." prosextract -auto -prositedir "${S}" || die \
+                       "Indexing PROSITE failed."
+               echo
+       fi
+}
+
+src_install() {
+       if ! use minimal; then
+               insinto /usr/share/${PN}
+               doins ${PN}.{doc,dat,lis} || die "Installing raw database failed."
+       fi
+       dodoc *.txt || die "Documentation installation failed."
+       dohtml *.htm || die "HTML documentation installation failed."
+       if use emboss; then
+               insinto /usr/share/EMBOSS/data/PROSITE
+               doins PROSITE/* || die "Installing EMBOSS data files failed."
+       fi
+}

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index b6881eb4c37a7ce07e6e1d56ec20a008a3ab64e9..993167f7285067bafd4cc9bc7a82da4a51e15b8f 100644 (file)
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.71 2006/09/12 20:24:54 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.72 2006/10/08 01:53:40 ribosome Exp $
+
+*rebase-610 (08 Oct 2006)
+
+  08 Oct 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-610.ebuild:
+  New upstream version.
 
 *rebase-609 (12 Sep 2006)
 

diff --git a/sci-biology/rebase/files/digest-rebase-610 b/sci-biology/rebase/files/digest-rebase-610
new file mode 100644 (file)
index 0000000..27823be
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-610
@@ -0,0 +1,3 @@
+MD5 dc9c04566e46ff8f3796f245e8fdfa07 rebase-610.tar.bz2 183836
+RMD160 f39b66acd481383f4b2dda932ad42d902bd23d34 rebase-610.tar.bz2 183836
+SHA256 f558655b399ab51cbfdf7bc3982025a7af66484528453360742bd45eac85b61d rebase-610.tar.bz2 183836

diff --git a/sci-biology/rebase/rebase-610.ebuild b/sci-biology/rebase/rebase-610.ebuild
new file mode 100644 (file)
index 0000000..55fe5a5
--- /dev/null
+++ b/sci-biology/rebase/rebase-610.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-610.ebuild,v 1.1 2006/10/08 01:53:40 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+       if use emboss; then
+               echo; einfo "Indexing Rebase for usage with EMBOSS."
+               mkdir REBASE
+               EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+                       -protofile proto.${PV} || die "Indexing Rebase failed."
+               echo
+       fi
+}
+
+src_install() {
+       if ! use minimal; then
+               insinto /usr/share/${PN}
+               doins withrefm.${PV} proto.${PV} || die \
+                       "Failed to install raw database."
+       fi
+       newdoc REBASE.DOC README || die "Failed to install documentation."
+       if use emboss; then
+               insinto /usr/share/EMBOSS/data/REBASE
+               doins REBASE/embossre.{enz,ref,sup} || die \
+                       "Failed to install EMBOSS data files."
+               insinto /usr/share/EMBOSS/data
+               doins embossre.equ || die "Failed to install enzyme prototypes file."
+       fi
+}