cache-tree: invalidate i-t-a paths after generating trees

cache-tree: invalidate i-t-a paths after generating trees

Intent-to-add entries used to forbid writing trees so it was not a
problem. After commit 3f6d56d (commit: ignore intent-to-add entries
instead of refusing - 2012-02-07), we can generate trees from an index
with i-t-a entries.

However, the commit forgets to invalidate all paths leading to i-t-a
entries. With fully valid cache-tree (e.g. after commit or
write-tree), diff operations may prefer cache-tree to index and not
see i-t-a entries in the index, because cache-tree does not have them.

Reported-by: Jonathon Mah <me@JonathonMah.com>
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>