posts:node: Add a post on Node and npm

[blog.git] / posts / sawsim.mdwn

diff --git a/posts/sawsim.mdwn b/posts/sawsim.mdwn
index 91ea7102387b3fb18ecbd43a0a60b93b6ec637a1..524a1e943cb0b0633588ca41645a0c63673005e3 100644 (file)
--- a/posts/sawsim.mdwn
+++ b/posts/sawsim.mdwn
@@ -27,8 +27,15 @@ actually going on behind the scenes.  Sawsim is my ([published][]!)
 tool for simulating force spectroscopy experiments and matching the
 simulations to experimental results.
 
-[AFM]: http://en.wikipedia.org/wiki/Atomic_force_microscopy
-[published]: http://dx.doi.org/10.1016/j.ijbiomac.2009.12.001
+The main benefits of sawsim are its ability to simulate systems with
+arbitrary numbers of states (see the [[manual|sawsim.pdf]]) and to
+easily compare the simulated data with experimental values.  The
+following figure shows a long valley of reasonable fits to some
+ubiquitin unfolding data.  See the IJBM paper (linked above) for more
+details.
+
+[[!img fit-space.png alt="Fit space Surface bump for photodiode sensitivity"
+  title="Surface bump for photodiode sensitivity" ]]
 
 
 Getting started
@@ -41,12 +48,17 @@ don't have access to any Windows boxes with a C compiler, so I haven't
 tested that ([[email me|contact]] if you have access to such a machine
 and want to try installing Sawsim).
 
-See the [[README]] and [[manual|sawsim.pdf]] for more details.
+See the [[README]], [[manual|sawsim.pdf]], and [PyPI page][pypi] for
+more details.
 
+[AFM]: http://en.wikipedia.org/wiki/Atomic_force_microscopy
+[published]: http://dx.doi.org/10.1016/j.ijbiomac.2009.12.001
+[pypi]: http://pypi.python.org/pypi/pysawsim/
 
 [[!tag tags/C]]
 [[!tag tags/papers]]
 [[!tag tags/programming]]
+[[!tag tags/pypi]]
 [[!tag tags/python]]
 [[!tag tags/sawsim]]
 [[!tag tags/theory]]