src/root.tex

   1 % Copyright (C)  2010  W.Trevor King <wking@drexel.edu>
   2 % Permission is granted to copy, distribute, and/or modify this document
   3 % under the terms of the Creative Commons Attribution-ShareAlike License
   4 % Version 3.0.
   5 %
   6 % You should have revieved a copy of the Creative Commons
   7 % Attribution-ShareAlike License along with this program (COPYING-CC);
   8 % if not, visit
   9 %   http://creativecommons.org/licenses/by-sa/3.0/legalcode
  10
  11 \documentclass[%
  12   subfig,%
  13   indenttoc,%
  14 %  final%
  15   draft%
  16 ]{drexel-thesis}
  17 % See drexel-thesis.pdf for more options.
  18
  19 %\includeonly{%
  20 %  cantilever/main,%
  21 %  temperature/main%
  22 %  cantilever-calib/main
  23 %}
  24
  25 \author{William Trevor King}
  26 \title{Temperature and cantilever dependent protein unfolding}
  27 \DUTmonth{July}
  28 \DUTyear{2012}
  29 \degree{Doctor of Philosophy}
  30 \advisor{Guoliang Yang, Ph.D.}
  31 \copyrighttext{\copyrighttextCCBYSA}
  32
  33 \input{packages}
  34
  35 \begin{document}
  36
  37 % Work-directory for Asymptote files (no spaces):
  38 \def\asydir{figures/scratch}
  39 \begin{asydef}
  40 // Global Asymptote definitions go here.
  41 //texpreamble("\documentclass{drexel-thesis}");
  42 //usepackage("packages");
  43 \end{asydef}
  44
  45
  46 \begin{preamble}
  47
  48 %\include{blurb/dedications}
  49 %\include{blurb/acknowledgments}
  50
  51 \tableofcontents
  52 \listoftables
  53 \listoffigures
  54
  55 \include{blurb/abstract}
  56
  57 \end{preamble}
  58 \linenumbers
  59
  60 \begin{thesis}
  61 \pdfbookmark[-1]{Mainmatter}{Mainmatter}
  62 \include{introduction/main}
  63 \include{apparatus/main}
  64 \include{unfolding/main}
  65 \include{sawsim/main}
  66 \include{temperature/main}
  67 \include{cantilever/main}
  68 \include{future/main}
  69 \end{thesis}
  70
  71 \bibliography{%
  72   apparatus/main,%
  73 %  unfolding-distributions/main,
  74 %  sawsim/main,% currently empty
  75   cantilever-calib/main,%
  76   packaging/main,%
  77   figures/main,%
  78   root}
  79
  80 \appendix
  81 \include{cantilever-calib/main}
  82 \include{viscocity/main}
  83
  84 \printnomenclature
  85 % avoid index's second column overlapping the nomenclature space.
  86 \iffinal{}{\pagebreak}
  87 \printindex
  88
  89 %\include{blurb/vita}
  90
  91 \end{document}