sci-chemistry/theseus/theseus-3.0.0.ebuild

   1 # Copyright 1999-2020 Gentoo Authors
   2 # Distributed under the terms of the GNU General Public License v2
   3
   4 EAPI=5
   5
   6 inherit multilib toolchain-funcs
   7
   8 DESCRIPTION="Maximum likelihood superpositioning and analysis of macromolecular structures"
   9 HOMEPAGE="http://www.theseus3d.org/"
  10 SRC_URI="http://www.theseus3d.org/src/${PN}_${PV}.tar.gz"
  11
  12 SLOT="0"
  13 LICENSE="GPL-3"
  14 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
  15 IUSE="examples"
  16
  17 RDEPEND="
  18         sci-libs/gsl
  19         || (
  20                 sci-biology/muscle
  21                 sci-biology/probcons
  22                 sci-biology/mafft
  23                 sci-biology/t-coffee
  24                 sci-biology/kalign
  25                 sci-biology/clustalw:2
  26                 )"
  27 DEPEND="${RDEPEND}
  28         virtual/pkgconfig"
  29
  30 S="${WORKDIR}"/${PN}_src/
  31
  32 src_prepare() {
  33         cat >> make.inc <<- EOF
  34         ARCH = $(tc-getAR)
  35         ARCHFLAGS = -rvs
  36         RANLIB = $(tc-getRANLIB)
  37         LOCALLIBDIR = "${EPREFIX}/usr/$(get_libdir)
  38         SYSLIBS = $(pkg-config --libs gsl) -lpthread
  39         LIBS = -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus
  40         LIBDIR = -L./lib
  41         INSTALLDIR = "${ED}"/usr/bin
  42         OPT =
  43         WARN =
  44         CFLAGS = ${CFLAGS} -std=c11 \$(WARN)
  45         CC = $(tc-getCC)
  46         EOF
  47
  48         sed \
  49                 -e 's|theseus:|theseus: libs|g' \
  50                 -e '/-o theseus/s:$(CC):$(CC) ${LDFLAGS}:g' \
  51                 -i Makefile || die
  52
  53         sed \
  54                 -e 's:/usr/bin/sed:sed:g' \
  55                 -e "s:/usr/local/bin/:/usr/bin/:g" \
  56                 -e "s:/usr/bin/:${EPREFIX}/usr/bin/:g" \
  57                 -i theseus_align || die
  58 }
  59
  60 src_compile() {
  61         emake ltheseus
  62         default
  63 }
  64
  65 src_install() {
  66         dobin theseus theseus_align
  67         dodoc theseus_man.pdf README AUTHORS
  68         use examples && insinto /usr/share/${PN} && doins -r examples
  69 }