sci-chemistry/coot/coot-0.7.ebuild

   1 # Copyright 1999-2014 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Id$
   4
   5 EAPI=4
   6
   7 PYTHON_DEPEND="2"
   8
   9 AUTOTOOLS_AUTORECONF="true"
  10
  11 inherit autotools-utils python toolchain-funcs versionator
  12
  13 MY_S2_PV=$(replace_version_separator 2 - ${PV})
  14 MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
  15 MY_S_P=${MY_S2_P}-${PR/r/revision-}
  16 MY_PV=${PV}
  17 MY_P=${PN}-${MY_PV}
  18
  19 DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
  20 HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
  21 SRC_URI="
  22         http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz
  23         test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz  )"
  24
  25 SLOT="0"
  26 LICENSE="GPL-3"
  27 KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
  28 IUSE="+openmp static-libs test"
  29
  30 AUTOTOOLS_IN_SOURCE_BUILD=1
  31
  32 SCIDEPS="
  33         >=sci-libs/ccp4-libs-6.1
  34         sci-libs/clipper
  35         >=sci-libs/coot-data-2
  36         >=sci-libs/gsl-1.3
  37         >=sci-libs/mmdb-1.23:0
  38         sci-libs/ssm
  39         <sci-libs/monomer-db-1
  40         sci-chemistry/reduce
  41         <sci-chemistry/refmac-5.6
  42         sci-chemistry/probe"
  43
  44 XDEPS="
  45         gnome-base/libgnomecanvas
  46         gnome-base/librsvg:2
  47         media-libs/libpng
  48         media-libs/freeglut
  49         x11-libs/gtk+:2
  50         x11-libs/goocanvas:0
  51         x11-libs/gtkglext"
  52
  53 SCHEMEDEPS="
  54         dev-scheme/net-http
  55         dev-scheme/guile-gui
  56         >=dev-scheme/guile-lib-0.1.6
  57         dev-scheme/guile-www
  58         >=x11-libs/guile-gtk-2.1"
  59
  60 RDEPEND="
  61         ${SCIDEPS}
  62         ${XDEPS}
  63         ${SCHEMEDEPS}
  64         dev-python/pygtk:2
  65         >=dev-libs/gmp-4.2.2-r2
  66         >=net-misc/curl-7.19.6
  67         net-dns/libidn"
  68 DEPEND="${RDEPEND}
  69         >=sys-devel/libtool-2.4-r2
  70         dev-lang/swig
  71         sys-devel/bc
  72         test? ( dev-scheme/greg )"
  73
  74 S="${WORKDIR}/${MY_P}"
  75
  76 pkg_setup() {
  77         if use openmp; then
  78                 tc-has-openmp || die "Please use an OPENMP capable compiler"
  79         fi
  80         python_set_active_version 2
  81         python_pkg_setup
  82 }
  83
  84 PATCHES=(
  85         "${FILESDIR}"/${P}-clipper-config.patch
  86         "${FILESDIR}"/${P}-goocanvas.patch
  87         "${FILESDIR}"/${P}-mmdb-config.patch
  88         "${FILESDIR}"/${P}-ssm.patch
  89         )
  90
  91 src_prepare() {
  92         sed \
  93                 -e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
  94                 -i configure.in || die
  95
  96         autotools-utils_src_prepare
  97 }
  98
  99 src_configure() {
 100         # All the --with's are used to activate various parts.
 101         # Yes, this is broken behavior.
 102         local myeconfargs=(
 103                 --includedir='${prefix}/include/coot'
 104                 --with-goocanvas-prefix="${EPREFIX}/usr"
 105                 --with-guile
 106                 --with-python="${EPREFIX}/usr"
 107                 --with-guile-gtk
 108                 --with-gtk2
 109                 --with-pygtk
 110                 $(use_enable openmp)
 111                 )
 112         autotools-utils_src_configure
 113 }
 114
 115 src_test() {
 116         source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
 117         mkdir "${T}"/coot_test
 118
 119         export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
 120         export COOT_SCHEME_DIR="${S}/scheme/"
 121         export COOT_RESOURCES_FILE="${S}/cootrc"
 122         export COOT_PIXMAPS_DIR="${S}/pixmaps/"
 123         export COOT_DATA_DIR="${S}/"
 124         export COOT_PYTHON_DIR="${S}/python/"
 125         export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
 126         export PYTHONHOME="${EPREFIX}"/usr/
 127         export CCP4_SCR="${T}"/coot_test/
 128         export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
 129         export SYMINFO="${S}/syminfo.lib"
 130
 131         export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data
 132
 133         cat > command-line-greg.scm <<- EOF
 134         (use-modules (ice-9 greg))
 135                 (set! greg-tools (list "greg-tests"))
 136                         (set! greg-debug #t)
 137                         (set! greg-verbose 5)
 138                         (let ((r (greg-test-run)))
 139                                 (if r
 140                                 (coot-real-exit 0)
 141                                 (coot-real-exit 1)))
 142         EOF
 143
 144         einfo "Running test with following paths ..."
 145         einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
 146         einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
 147         einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
 148         einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
 149         einfo "COOT_DATA_DIR $COOT_DATA_DIR"
 150         einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
 151         einfo "PYTHONPATH $PYTHONPATH"
 152         einfo "PYTHONHOME $PYTHONHOME"
 153         einfo "CCP4_SCR ${CCP4_SCR}"
 154         einfo "CLIBD_MON ${CLIBD_MON}"
 155         einfo "SYMINFO ${SYMINFO}"
 156
 157         "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
 158         "${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
 159 }