sci-biology/recon/recon-1.08.ebuild

   1 # Copyright 1999-2017 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Id$
   4
   5 EAPI=6
   6
   7 inherit toolchain-funcs
   8
   9 DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
  10 HOMEPAGE="http://www.repeatmasker.org/RepeatModeler.html"
  11 SRC_URI="http://www.repeatmasker.org/${P^^}.tar.gz"
  12
  13 LICENSE="GPL-2"
  14 SLOT="0"
  15 IUSE="examples"
  16 KEYWORDS="~amd64 ~x86"
  17
  18 RDEPEND="dev-lang/perl"
  19
  20 S=${WORKDIR}/${P^^}
  21
  22 PATCHES=(
  23         "${FILESDIR}"/${PN}-1.08-buffer-overflow.patch
  24         "${FILESDIR}"/${PN}-1.08-perl-shebangs.patch
  25 )
  26
  27 src_prepare() {
  28         default
  29         sed -i "s|$path = \"\";|$path = \"${EPREFIX}/usr/libexec/${PN}\";|" scripts/recon.pl || die
  30 }
  31
  32 src_compile() {
  33         emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" -C src
  34 }
  35
  36 src_install() {
  37         dobin scripts/*
  38
  39         exeinto /usr/libexec/${PN}
  40         doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
  41
  42         newdoc {00,}README
  43
  44         if use examples; then
  45                 insinto /usr/share/${PN}
  46                 doins -r Demos
  47         fi
  48 }