sci-biology/recon/recon-1.06-r2.ebuild

   1 # Copyright 1999-2012 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Id$
   4
   5 EAPI="4"
   6
   7 inherit eutils toolchain-funcs
   8
   9 DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
  10 HOMEPAGE="http://selab.janelia.org/recon.html http://www.repeatmasker.org/RepeatModeler.html"
  11 SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz"
  12
  13 LICENSE="GPL-2"
  14 SLOT="0"
  15 IUSE="examples"
  16 KEYWORDS="~amd64 ~x86"
  17
  18 S="${WORKDIR}/RECON${PV}"
  19
  20 src_prepare() {
  21         epatch \
  22                 "${FILESDIR}"/${PV}-buffer-overflow.patch \
  23                 "${FILESDIR}"/${P}-respect.patch
  24         sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die
  25         tc-export CC
  26 }
  27
  28 src_compile() {
  29         emake -C src
  30 }
  31
  32 src_install() {
  33         dobin scripts/*
  34         exeinto /usr/libexec/${PN}
  35         doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
  36         dodoc 00README
  37         insinto /usr/share/${PN}
  38         use examples && doins -r Demos
  39 }