sci-biology/cutg/cutg-160-r1.ebuild

   1 # Copyright 1999-2017 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3
   4 EAPI=5
   5
   6 DESCRIPTION="Codon usage tables calculated from GenBank"
   7 HOMEPAGE="http://www.kazusa.or.jp/codon/"
   8 SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
   9
  10 SLOT="0"
  11 LICENSE="public-domain"
  12 # Minimal build keeps only the indexed files (if applicable) and the
  13 # documentation. The non-indexed database is not installed.
  14 IUSE="emboss minimal"
  15 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
  16
  17 DEPEND="emboss? ( sci-biology/emboss )"
  18 RDEPEND="${DEPEND}"
  19
  20 RESTRICT="binchecks strip"
  21
  22 src_compile() {
  23         if use emboss; then
  24                 mkdir CODONS || die
  25                 ebegin "Indexing CUTG for usage with EMBOSS."
  26                 EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
  27                         "Indexing CUTG failed."
  28                 eend
  29         fi
  30 }
  31
  32 src_install() {
  33         local file
  34         dodoc README CODON_LABEL SPSUM_LABEL
  35         if ! use minimal; then
  36                 dodir /usr/share/${PN}
  37                 mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
  38                         "Installing raw CUTG database failed."
  39         fi
  40
  41         if use emboss; then
  42                 dodir /usr/share/EMBOSS/data/CODONS
  43                 cd CODONS || die
  44                 for file in *; do
  45                         mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \
  46                                 "Installing the EMBOSS-indexed database failed."
  47                 done
  48         fi
  49 }