sci-biology/bfast/bfast-0.7.0a.ebuild

   1 # Copyright 1999-2015 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3 # $Id$
   4
   5 EAPI=5
   6
   7 AUTOTOOLS_AUTORECONF=true
   8
   9 inherit autotools-utils flag-o-matic
  10
  11 DESCRIPTION="Blat-like Fast Accurate Search Tool"
  12 HOMEPAGE="https://sourceforge.net/projects/bfast/"
  13 SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
  14
  15 LICENSE="GPL-2"
  16 SLOT="0"
  17 IUSE="test"
  18 KEYWORDS="~amd64 ~x86"
  19
  20 DEPEND=""
  21 RDEPEND="dev-perl/XML-Simple"
  22
  23 src_prepare() {
  24         sed \
  25                 -e 's/-m64//' \
  26                 -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
  27                 -e 's:-g -O2::g' \
  28                 -i configure.ac || die
  29         sed \
  30                 -e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
  31                 -i tests/*sh || die
  32
  33         sed \
  34                 -e '/docdir/d' \
  35                 -i Makefile.am || die
  36
  37         use test && AUTOTOOLS_IN_SOURCE_BUILD=1
  38
  39         append-flags -fgnu89-inline
  40
  41         autotools-utils_src_prepare
  42 }