sci-biology/abyss/abyss-2.0.3.ebuild

   1 # Copyright 1999-2018 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3
   4 EAPI=6
   5
   6 inherit autotools toolchain-funcs
   7
   8 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
   9 HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
  10 SRC_URI="https://github.com/bcgsc/abyss/archive/${PV}.tar.gz -> ${P}.tar.gz"
  11
  12 LICENSE="abyss"
  13 SLOT="0"
  14 IUSE="+mpi openmp misc-haskell"
  15 KEYWORDS="~amd64 ~x86"
  16
  17 RDEPEND="
  18         dev-cpp/sparsehash
  19         dev-libs/boost:=
  20         misc-haskell? (
  21                 dev-libs/gmp:0=
  22                 virtual/libffi:0=
  23         )
  24         mpi? ( sys-cluster/openmpi )"
  25 DEPEND="${RDEPEND}
  26         misc-haskell? (
  27                 dev-lang/ghc
  28         )"
  29
  30 # todo: --enable-maxk=N configure option
  31 # todo: fix automagic mpi toggling
  32
  33 pkg_pretend() {
  34         [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
  35 }
  36
  37 pkg_setup() {
  38         [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
  39 }
  40
  41 src_prepare() {
  42         default
  43         sed -i -e "s/-Werror//" configure.ac || die #365195
  44         sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
  45         eautoreconf
  46 }
  47
  48 src_configure() {
  49         # disable building haskell tool Misc/samtobreak
  50         # unless request by user: bug #534412
  51         use misc-haskell || export ac_cv_prog_ac_ct_GHC=
  52
  53         econf $(use_enable openmp)
  54 }