sci-biology/HTSeq/HTSeq-0.9.1.ebuild

   1 # Copyright 1999-2017 Gentoo Foundation
   2 # Distributed under the terms of the GNU General Public License v2
   3
   4 EAPI=6
   5
   6 PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
   7
   8 inherit distutils-r1
   9
  10 DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
  11 HOMEPAGE="https://htseq.readthedocs.io/"
  12
  13 if [[ ${PV} == *9999 ]]; then
  14         inherit git-r3
  15         EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
  16 else
  17         SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
  18         KEYWORDS="~amd64"
  19 fi
  20
  21 LICENSE="GPL-3+"
  22 SLOT="0"
  23
  24 RDEPEND="
  25         dev-python/numpy[${PYTHON_USEDEP}]
  26         dev-python/matplotlib[${PYTHON_USEDEP}]
  27         sci-biology/pysam[${PYTHON_USEDEP}]"
  28 DEPEND="
  29         ${RDEPEND}
  30         >=dev-lang/swig-3.0.8
  31         dev-python/cython[${PYTHON_USEDEP}]"